Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002434`

染色体: Chr01 坐标: 41927345-41932941 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002434`
名称	SmilChr01G002434
描述	probable trehalose-phosphate phosphatase F
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41927345 - 41932941 / `+`

ID 对照

NCBI Gene ID	`LOC131025376`
GeneID	`131025376`
locus_tag	`-`
NCBI Name	`LOC131025376`
原始查询	`SmilChr01G002434`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable trehalose-phosphate phosphatase F
产物	probable trehalose-phosphate phosphatase F
Arabidopsis	`AT4G22590` (TPPG) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828355] identity=63.8; qcov=0.972; evalue=8.13e-177; confidence=high
Rice	`Os10g0553300` (OsTPP2) - identity=57.4; qcov=0.955; evalue=2.92e-149; confidence=high
GO	GO:0004805 (trehalose-phosphatase activity); GO:0005992 (trehalose biosynthetic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:131025376

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057811097.1`
2	Cytosol	细胞质基质	0.40000	`XP_057811097.1`
3	Nucleus	细胞核	0.20000	`XP_057811097.1`
4	Mitochondrion	线粒体	0.20000	`XP_057811097.1`
5	Chromosome	染色体	0.00000	`XP_057811097.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41930567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:41930763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B55
`Chr1:41930789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr1:41930807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr1:41930996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C33
`Chr1:41931000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:41931018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr1:41931735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:41931770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C32,C68
`Chr1:41932013`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B70,C83
`Chr1:41932013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,C83
`Chr1:41932657`	`T`	`TA`	1bp_insertion	frameshift_variant	99	A10,A2,A20,A21,A24,A25,A5,A7,A8,A9,B10,B105,B106,B107,B110,B112,B114,B115,B117,B121,B122,B123,B125,B130,B132,B136,B137,B138,B14,B15,B16,B17,B18,B19,B20,B23,B28,B30,B31,B38,B39,B40,B42,B5,B51,B53,B57,B59,B63,B64,B70,B71,B73,B75,B79,B86,B88,B89,B9,B93,B95,C11,C14,C15,C16,C19,C21,C22,C27,C3,C30,C33,C4,C41,C44,C46,C49,C5,C50,C54,C58,C61,C62,C64,C66,C69,C71,C73,C77,C78,C80,C81,C83,C87,C9,D1,D6,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811097.1

398 aa

199

398

Trehalose_PPase

PF02358 Trehalose_PPase 123-366 aa

XP_057811104.1

398 aa

199

398

Trehalose_PPase

PF02358 Trehalose_PPase 123-366 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811097.1`	Pfam	`PF02358`	Trehalose_PPase	Family	123	366	2.6e-68	230.4	Trehalose-phosphatase
`XP_057811104.1`	Pfam	`PF02358`	Trehalose_PPase	Family	123	366	2.6e-68	230.4	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955114.1
AATAAATACATTGCCTTTTCGCCTTCTCCTCTCTTTTTTCCATTCTCTCTCTCTCTCTCCCTCCGTCTCTGTCTCTCTATCATTTTTCAGTTTTCTGTTGCTCTATATTTCCTTTTCCTAGGGTTTCTTCTAAACCTGCCGTCGTTTGTTTTGAGGACGCCAATTGATTCCTCTATTGCCGTTCTGTTAAATTTCAGAGACGCATCAGGATAACAGTCAAGTGGTGAAATTGACTGTCTGCCTGGTGTAAGTAAATAGAG...

XM_057955121.1
ATAAAAACCGGTGAATGTATTGCCGAAACATGCATTTTAGATCTAAGGCAAACTGCAGCAAGGAAGACAGTTTTTGGATAACAGTCAAGTGGTGAAATTGACTGTCTGCCTGGTGTAAGTAAATAGAGGTTCGGAAATGAGATTGTGCAGAGTCTCAATTTAATGGACTATTTCCCAAGCAGCAGTTGCAAAAAGACATTAAAGAGGTGGTTTTTCATAGATAAGAGGGTCGGATAGAGGATTTTAGTCAATACATTCCA...

CDS

2 records

下载 CDS FASTA

LOC131025376
ATGGATTTGAAGTCGACAAAAGCTTCTCCGGTTCTTGCGGATCCTGCACCCATGAACAAGTCTAGACTGGGGATCCATTCTGGTCTCTTGCCCTGCTCACAATCTGGACCGTCTTTCTCCACTGCCGTCTCATCAATTCCCAGAAAAAAGCCAGGAAAGCTCGATGATGTCTGTTCCAATGGCTGGCTTGATGCTATGAAATCATCTTCCCCTCCTCGCAAGAAAGTTCTTAAGGATTTCAACTTTGCTGATTTGGTTCC...

Protein

2 records

下载 Protein FASTA

XP_057811097.1
MDLKSTKASPVLADPAPMNKSRLGIHSGLLPCSQSGPSFSTAVSSIPRKKPGKLDDVCSNGWLDAMKSSSPPRKKVLKDFNFADLVPDDGETAYESWKIRYPSALNSFRTISTRARNRKIVVFLDYDGTLSPIVDDPDRAFLSDDMRSAVRSVAKHFPTAVISGRNRDKVFQLVGLTELYYAGSHGMDIIFPGRDMMSRNNINCVKSTDKEGKEVNLFQPAREFLPMINEVFTKLVETCKDIKGAKVENHKFCASVHYRN...

XP_057811104.1
MDLKSTKASPVLADPAPMNKSRLGIHSGLLPCSQSGPSFSTAVSSIPRKKPGKLDDVCSNGWLDAMKSSSPPRKKVLKDFNFADLVPDDGETAYESWKIRYPSALNSFRTISTRARNRKIVVFLDYDGTLSPIVDDPDRAFLSDDMRSAVRSVAKHFPTAVISGRNRDKVFQLVGLTELYYAGSHGMDIIFPGRDMMSRNNINCVKSTDKEGKEVNLFQPAREFLPMINEVFTKLVETCKDIKGAKVENHKFCASVHYRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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