Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002437`

染色体: Chr01 坐标: 41959720-41963335 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002437`
名称	SmilChr01G002437
描述	thylakoid lumenal protein TL20.3, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41959720 - 41963335 / `-`

ID 对照

NCBI Gene ID	`LOC131025414`
GeneID	`131025414`
locus_tag	`-`
NCBI Name	`LOC131025414`
原始查询	`SmilChr01G002437`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thylakoid lumenal protein TL20.3, chloroplastic
产物	thylakoid lumenal protein TL20.3%2C chloroplastic
Arabidopsis	`AT1G12250` (AT1G12250) Pentapeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837778] identity=85.8; qcov=0.774; evalue=3.41e-128; confidence=high
Rice	`Os02g0643500` - identity=94.7; qcov=0.717; evalue=2.02e-130; confidence=high
GO	-
KEGG	-
Pfam	PF00805 (Pentapeptide)
InterPro	-
eggNOG	-
NR	GeneID:131025414

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057811151.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057811151.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057811151.1`
4	Nucleus	细胞核	0.00000	`XP_057811151.1`
5	Chromosome	染色体	0.00000	`XP_057811151.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41959936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:41959937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:41959948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C11,C69
`Chr1:41960068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B129
`Chr1:41960091`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C63
`Chr1:41960091`	`GC`	`G`	1bp_deletion	CDS_variant	1	C63
`Chr1:41960093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr1:41960133`	`CA`	`C`	1bp_deletion	frameshift_variant	14	B113,B13,B46,B55,B9,B91,C17,C2,C23,C41,C52,C57,C76,C87
`Chr1:41960163`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A18
`Chr1:41960163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:41961956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:41962160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B113,B25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811151.1

287 aa

144

287

Pentapeptide

PF00805 Pentapeptide 94-133 aa PF00805 Pentapeptide 119-156 aa PF00805 Pentapeptide 161-195 aa

XP_057811160.1

265 aa

132

265

Pentapeptide

PF00805 Pentapeptide 94-133 aa PF00805 Pentapeptide 119-156 aa PF00805 Pentapeptide 161-195 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811151.1`	Pfam	`PF00805`	Pentapeptide	Repeat	94	133	8.5e-21	73.9	Pentapeptide repeats (8 copies)
`XP_057811151.1`	Pfam	`PF00805`	Pentapeptide	Repeat	119	156	8.5e-21	73.9	Pentapeptide repeats (8 copies)
`XP_057811151.1`	Pfam	`PF00805`	Pentapeptide	Repeat	161	195	8.5e-21	73.9	Pentapeptide repeats (8 copies)
`XP_057811160.1`	Pfam	`PF00805`	Pentapeptide	Repeat	94	133	5.1e-21	74.6	Pentapeptide repeats (8 copies)
`XP_057811160.1`	Pfam	`PF00805`	Pentapeptide	Repeat	119	156	5.1e-21	74.6	Pentapeptide repeats (8 copies)
`XP_057811160.1`	Pfam	`PF00805`	Pentapeptide	Repeat	161	195	5.1e-21	74.6	Pentapeptide repeats (8 copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955177.1
TCTTATATATATTTTAAAATTTTGAAATTCGGCTAATTATAATTATAATATATTTGATATGTATATCAAATTAAAGGTTAGGACAAGAGTTTTAATTGATATATTTTATGTAAATATTGAATTTAAAATGTAAAAGTTAAAGATTAAAACGTAACAAAATCCCCTCATCTTTTATCATTTTTTTAATAAATCTTTTTTTTTTCTTTTAGTATCAATTTTTTTATTATTGTGATTTTTTTTTTCTATATTAGGCTCAATAT...

XM_057955168.1
TAGCACATAACTGTTGCAAATAAATCGAATGATATGATAGAAAGAATTGTTAATAATATTGATAGTATATTTTGCCTAATAAATAAATAAAATTAGAAAAGGAGATGCTTGTACTATAAAATAATTAAAGATAATTTTGAGTAACAAGTGGCCTAATGGAGATCAAATAATGAAACGGTATATATGTGTAAGCATACCAACCAATTATCAGCATTCTAAAGATGTGGATAATACAAAAATCTGATATCCCAATAACTGTC...

CDS

2 records

下载 CDS FASTA

LOC131025414
ATGGCTCTTACTTCAATCTCCTTATTACCCTTGAAATCCATCAATGGCACAGACAGACCGCTCAATCCCCTCCACATACCTCCAAAACCCTTTTCTCTAAACTGCCAATTGGAAACTCAAAGGGGGGAAAATGACGCAGAGCCAACGAAGTGGAGAAAGCTCGTTTCAACTTCATTGGCTGCAGCTGTGATTGCCTTCACCACTGCTAACATGCCTGCCATGGCTGATCTCAATAAATTTGAGGCTGAAACTCGAGGCGA...

Protein

2 records

下载 Protein FASTA

XP_057811151.1
MALTSISLLPLKSINGTDRPLNPLHIPPKPFSLNCQLETQRGENDAEPTKWRKLVSTSLAAAVIAFTTANMPAMADLNKFEAETRGEFGIGSAAQFGSADLKKAVHVNENFRRANFTSADMRESNFSGSTFNGAYLEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVLDLPQKQVSLSTKNHVVLELCCLMFVLVQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSS...

XP_057811160.1
MALTSISLLPLKSINGTDRPLNPLHIPPKPFSLNCQLETQRGENDAEPTKWRKLVSTSLAAAVIAFTTANMPAMADLNKFEAETRGEFGIGSAAQFGSADLKKAVHVNENFRRANFTSADMRESNFSGSTFNGAYLEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPPKLLDRDGFCDSATG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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