当前解析结果
SmilChr01G002447| 统一新 Gene ID | SmilChr01G002447 |
|---|---|
| 名称 | SmilChr01G002447 |
| 描述 | elongation factor G-2, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 42058999 - 42063348 / - |
| NCBI Gene ID | LOC131025502 |
|---|---|
| GeneID | 131025502 |
| locus_tag | - |
| NCBI Name | LOC131025502 |
| 原始查询 | SmilChr01G002447 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor G-2, chloroplastic |
| 产物 | elongation factor G-2%2C chloroplastic |
| Arabidopsis | AT1G62750 (SCO1)Translation elongation factor EFG/EF2 protein [Source:NCBI gene (formerly Entrezgene);Acc:842573] identity=83.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0538100- identity=87.6; qcov=0.494; evalue=0; confidence=medium |
| GO | GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005739 (mitochondrion); GO:0006414 (translational elongation); GO:0009507 (chloroplast); GO:0032543 (mitochondrial translation); GO:0032790 (ribosome disassembly) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF03144 (GTP_EFTU_D2); PF03764 (EFG_IV); PF14492 (EFG_III); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025502 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057811282.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057811282.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811282.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811282.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811282.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:42060010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C26 |
Chr1:42060013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B133,C7 |
Chr1:42060175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C37,D10,D11 |
Chr1:42060748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B90,B92 |
Chr1:42060772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B127,B16,C1,C24 |
Chr1:42060815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B109,B133,C7 |
Chr1:42060965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C42 |
Chr1:42061811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:42061943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B129,B140,C11,C69 |
Chr1:42061947 |
A |
AAT |
2bp_insertion | frameshift_variant | 6 | B110,B16,B6,B88,C22,C67 |
Chr1:42061948 |
TCG |
T |
2bp_deletion | frameshift_variant | 6 | B110,B16,B6,B88,C22,C67 |
Chr1:42062024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B133,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811282.1PF00009
GTP_EFTU 92-365 aa
PF22042
EF-G_D2 393-476 aa
PF03144
GTP_EFTU_D2 408-475 aa
PF14492
EFG_III 488-561 aa
PF03764
EFG_IV 563-681 aa
PF00679
EFG_C 685-771 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811282.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 92 | 365 | 1.7e-67 | 227.4 | Elongation factor Tu GTP binding domain |
XP_057811282.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 393 | 476 | 5.4e-17 | 62.4 | Elongation factor G domain 2 |
XP_057811282.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 408 | 475 | 2.7e-17 | 63.7 | Elongation factor Tu domain 2 |
XP_057811282.1 |
Pfam | PF14492 |
EFG_III | Domain | 488 | 561 | 3.7e-33 | 114.1 | Elongation Factor G, domain III |
XP_057811282.1 |
Pfam | PF03764 |
EFG_IV | Domain | 563 | 681 | 5.9e-46 | 155.9 | Elongation factor G, domain IV |
XP_057811282.1 |
Pfam | PF00679 |
EFG_C | Domain | 685 | 771 | 4.2e-27 | 94.7 | Elongation factor G C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。