当前解析结果
SmilChr01G002464| 统一新 Gene ID | SmilChr01G002464 |
|---|---|
| 名称 | SmilChr01G002464 |
| 描述 | uncharacterized SmilChr01G002464 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 42337723 - 42338740 / - |
| NCBI Gene ID | LOC131008287 |
|---|---|
| GeneID | 131008287 |
| locus_tag | - |
| NCBI Name | LOC131008287 |
| 原始查询 | SmilChr01G002464 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low |
| 产物 | no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G66235 (AT1G66235)no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=28; qcov=0.949; evalue=1.61e-13; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008287 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791160.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791160.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791160.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791160.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791160.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:42337787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B4,B51,C50 |
Chr1:42338189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B16,B33,C2,C39,C46 |
Chr1:42338203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr1:42338211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr1:42338226 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C78 |
Chr1:42338226 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C78 |
Chr1:42338255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B122 |
Chr1:42338266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B32,B69 |
Chr1:42338285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B70,C28,C65 |
Chr1:42338629 |
G |
A |
EMS_canonical_SNV | stop_gained | 154 | A1,A10,A11,A14,A15,A19,A20,A22,A25,A4,A5,A6,A7,B1,B100,B101,B102,B103,B105,B11,B110,B111,B114,B117,B118,B119,B120,B123,B125,B126,B13,B130,B134,B135,B136,B138,B139,B16,B17,B2,B20,B21,B22,B24,B26,B27,B29,B3,B30,B32,B33,B34,B36,B38,B39,B4,B40,B41,B42,B43,B44,B45,B5,B50,B52,B55,B57,B58,B60,B61,B62,B63,B65,B67,B69,B7,B72,B73,B74,B75,B76,B77,B78,B79,B81,B82,B86,B89,B90,B93,B94,B95,B96,B97,B98,B99,C10,C12,C14,C15,C16,C18,C19,C23,C24,C25,C27,C29,C30,C31,C35,C36,C37,C38,C4,C41,C42,C43,C44,C45,C46,C48,C49,C5,C51,C52,C55,C56,C6,C63,C64,C65,C66,C68,C70,C71,C72,C73,C75,C76,C77,C79,C8,C81,C83,C87,D10,D11,D2,D3,D4,D6,D8,D9 |
Chr1:42338672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,D4 |
Chr1:42338680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B97,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。