Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002473`

染色体: Chr01 坐标: 42455494-42461275 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002473`
名称	SmilChr01G002473
描述	amine oxidase [copper-containing] gamma 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42455494 - 42461275 / `-`

ID 对照

NCBI Gene ID	`LOC131025699`
GeneID	`131025699`
locus_tag	`-`
NCBI Name	`LOC131025699`
原始查询	`SmilChr01G002473`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amine oxidase [copper-containing] gamma 2-like
产物	amine oxidase [copper-containing] gamma 2-like
Arabidopsis	`AT4G12290` (AT4G12290) Copper amine oxidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826838] identity=60.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0338200` (OsDAO1) - identity=43.7; qcov=0.94; evalue=0; confidence=medium
GO	GO:0005507 (copper ion binding); GO:0008131 (primary methylamine oxidase activity); GO:0009308 (amine metabolic process); GO:0048038 (quinone binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01179 (Cu_amine_oxid); PF02727 (Cu_amine_oxidN2); PF02728 (Cu_amine_oxidN3)
InterPro	-
eggNOG	-
NR	GeneID:131025699

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057811475.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057811475.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057811475.1`
4	Nucleus	细胞核	0.00000	`XP_057811475.1`
5	Chromosome	染色体	0.00000	`XP_057811475.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42455883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B123,B59
`Chr1:42455992`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B27
`Chr1:42455992`	`TC`	`T`	1bp_deletion	CDS_variant	1	B27
`Chr1:42456036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B12
`Chr1:42457454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr1:42457555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr1:42457586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr1:42457855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C5
`Chr1:42457889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr1:42457897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,D3
`Chr1:42458062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B2
`Chr1:42460694`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811475.1

721 aa

360

721

Cu_amine_oxidN2

Cu_amine_oxidN3

Cu_amine_oxid

PF02727 Cu_amine_oxidN2 73-154 aa PF02728 Cu_amine_oxidN3 168-270 aa PF01179 Cu_amine_oxid 298-708 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811475.1`	Pfam	`PF02727`	Cu_amine_oxidN2	Domain	73	154	5e-18	65.8	Copper amine oxidase, N2 domain
`XP_057811475.1`	Pfam	`PF02728`	Cu_amine_oxidN3	Domain	168	270	3.4e-25	89.0	Copper amine oxidase, N3 domain
`XP_057811475.1`	Pfam	`PF01179`	Cu_amine_oxid	Domain	298	708	1.2e-130	436.7	Copper amine oxidase, enzyme domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955492.1
TTATATAATATTTTTTTTAATTTCAATAATAAAAATTACAAAATAAAGAGATTAAAATGAGATACGAGGTTCTATTTGGGAGTCTGGGACCGGACCACTCTCATAGTTATTCCTATATATACACACACACAGCGTACACACTCCCTCACACGAAATGGAGGGCAAGAGCTTCCTCCGCCGTCTCTTCCTCATCTCCGCCGTCGCCTCCGTCGTCCTCCTAACCATCATTACCCTCCCGCCGCTCCCCACCAAACCCGACC...

CDS

1 records

下载 CDS FASTA

LOC131025699
ATGGAGGGCAAGAGCTTCCTCCGCCGTCTCTTCCTCATCTCCGCCGTCGCCTCCGTCGTCCTCCTAACCATCATTACCCTCCCGCCGCTCCCCACCAAACCCGACCTCCACGAGTGTGCCACCAACTCCGTGTGGTGCACCGCCAAGAACCGCTTCCTCCGGCACCCAGCCGACGCGGCGGCGGTCGGAAACGACCACAGCGGCGATGTCCCCCACCACCCCCTGGACCCGCTGACCGTCCAGGAAATGAACCGGGCCCA...

Protein

1 records

下载 Protein FASTA

XP_057811475.1
MEGKSFLRRLFLISAVASVVLLTIITLPPLPTKPDLHECATNSVWCTAKNRFLRHPADAAAVGNDHSGDVPHHPLDPLTVQEMNRAHKSIKSFFAGKVYGVHSLVLEEADKEVVLRWRKPDPLPPRKASVIARAAGKNYILTVDLESSEVSQHDATQISGYPMVTLEDMQSMIYAPLANADFNRTILARGVDLADVTCLPFSPGWYGEAEDGRRLVKLECFSMKDTANFYMRPIEGVIVVTDLDTKQVVEIVDKGKHIPI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器