Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002485`

染色体: Chr01 坐标: 42570901-42575733 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002485`
名称	SmilChr01G002485
描述	phosphoacetylglucosamine mutase
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42570901 - 42575733 / `+`

ID 对照

NCBI Gene ID	`LOC131025748`
GeneID	`131025748`
locus_tag	`-`
NCBI Name	`LOC131025748`
原始查询	`SmilChr01G002485`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoacetylglucosamine mutase
产物	phosphoacetylglucosamine mutase
Arabidopsis	`AT5G18070` (DRT101) phosphoglucosamine mutase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831926] identity=63.7; qcov=1; evalue=0; confidence=high
Rice	`Os07g0195400` (AGM1) - identity=59.3; qcov=0.971; evalue=0; confidence=high
GO	GO:0004610 (phosphoacetylglucosamine mutase activity); GO:0005975 (carbohydrate metabolic process); GO:0006048 (UDP-N-acetylglucosamine biosynthetic process)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00408 (PGM_PMM_IV); PF02878 (PGM_PMM_I); PF02880 (PGM_PMM_III); PF21404 (AMG1_III); PF21405 (AMG1_II)
InterPro	-
eggNOG	-
NR	GeneID:131025748

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811520.1`
2	Cytoplasm	细胞质	1.00000	`XP_057811520.1`
3	Chromosome	染色体	0.00000	`XP_057811520.1`
4	Centromere	着丝粒	0.00000	`XP_057811520.1`
5	Chromatin	染色质	0.00000	`XP_057811520.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42573071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B97,C13
`Chr1:42573508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:42574180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B7
`Chr1:42574408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B7
`Chr1:42575481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C8,C83
`Chr1:42575501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811520.1

557 aa

278

557

PGM_PMM_I

AMG1_II

PGM_PMM_III

AMG1_III

PGM_PMM_IV

PF02878 PGM_PMM_I 58-88 aa PF02878 PGM_PMM_I 126-177 aa PF21405 AMG1_II 182-289 aa PF02880 PGM_PMM_III 304-403 aa PF21404 AMG1_III 304-456 aa PF00408 PGM_PMM_IV 474-546 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811520.1`	Pfam	`PF02878`	PGM_PMM_I	Domain	58	88	8e-15	55.5	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
`XP_057811520.1`	Pfam	`PF02878`	PGM_PMM_I	Domain	126	177	8e-15	55.5	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
`XP_057811520.1`	Pfam	`PF21405`	AMG1_II	Domain	182	289	3.4e-07	31.5	Phosphoacetylglucosamine mutase AMG1, domain II
`XP_057811520.1`	Pfam	`PF02880`	PGM_PMM_III	Domain	304	403	7.5e-09	36.4	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
`XP_057811520.1`	Pfam	`PF21404`	AMG1_III	Domain	304	456	1.3e-52	178.0	Phosphoacetylglucosamine mutase AMG1, domain III
`XP_057811520.1`	Pfam	`PF00408`	PGM_PMM_IV	Domain	474	546	3.1e-14	53.5	Phosphoglucomutase/phosphomannomutase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955537.1
AAAAACTTAAGTCACCCCCACCCCCACTACGACACACCCAATCCGCCGCCCTTTACCCCCTTCCCCATTTCTTGTATCTGCAATTTCAGCCCCCCACCCACCATTACTTTACCCTGCAACTTACCCCTGTTGCCTCCCCCTCCCAAGCTAACTGTCGGCCACCACCTTCTCTTGCATTCCCCTTCCGACCTTCCCTCCTCCATCACTCTAGAATTAATAGATGTGATAATTAAGAATTTCTATTCAATAAAATATAATTT...

CDS

1 records

下载 CDS FASTA

LOC131025748
ATGAACCCAGAGCAGCAATCGCTTCTCCTTAGCTCTGCATCTCGCTTTCCCATACCCGCAGGAGCGAAATTTTCGTACGGAACATCGGGATTTAGGGCGGATGCATCGTTGCTGGAATCAACGGTATTCCGCGTGGGGATATTGGCGGCTCTGCGGTCCATCCAGACGAGGTCAGTGATCGGGCTGATGATCACCGCTTCCCACAATCAGGTTTCTGATAATGGTGTCAAACTGGCTGATCCATCTGGTGGAATGCTCAC...

Protein

1 records

下载 Protein FASTA

XP_057811520.1
MNPEQQSLLLSSASRFPIPAGAKFSYGTSGFRADASLLESTVFRVGILAALRSIQTRSVIGLMITASHNQVSDNGVKLADPSGGMLTQTWEPFADTLANAPDHHSLLQLLDDFIKKENIILEGALAAEVYLGRDTRPSGETLLEAAKQGITSLMGTTASDMGIVTTPQLHWMVRAKNKGIEATELNYYNQMLTSFRCLLDYIPQGDSTKNESDKLIVDGADGVGGEKLENLKTGLGYLTIDVRNCGDGVLNEGVGADYVQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器