当前解析结果
SmilChr01G002486| 统一新 Gene ID | SmilChr01G002486 |
|---|---|
| 名称 | SmilChr01G002486 |
| 描述 | putative pentatricopeptide repeat-containing protein At5g43820 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 42576465 - 42580851 / - |
| NCBI Gene ID | LOC131025758 |
|---|---|
| GeneID | 131025758 |
| locus_tag | - |
| NCBI Name | LOC131025758 |
| 原始查询 | SmilChr01G002486 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At5g43820 |
| 产物 | putative pentatricopeptide repeat-containing protein At5g43820 |
| Arabidopsis | AT5G43820 (AT5G43820)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834404] identity=50.9; qcov=0.931; evalue=0; confidence=high |
| Rice | Os02g0304800- identity=44.8; qcov=0.858; evalue=7.84e-146; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025758 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057811530.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057811530.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811530.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811530.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811530.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:42576802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B137,B19,C74 |
Chr1:42577041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:42577137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:42577199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C65 |
Chr1:42577227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B7 |
Chr1:42577248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:42577405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B26,B80,C38,C60,D4 |
Chr1:42577430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:42577459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:42577750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:42577946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B64,C4 |
Chr1:42578177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B98,C43,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811530.1PF01535
PPR 193-218 aa
PF13041
PPR_2 255-302 aa
PF01535
PPR 258-287 aa
PF13812
PPR_3 280-320 aa
PF12854
PPR_1 285-316 aa
PF01535
PPR 292-320 aa
PF01535
PPR 330-359 aa
PF01535
PPR 365-394 aa
PF01535
PPR 473-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 193 | 218 | 1.9e-29 | 100.5 | PPR repeat |
XP_057811530.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 255 | 302 | 2e-43 | 147.0 | PPR repeat family |
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 258 | 287 | 1.9e-29 | 100.5 | PPR repeat |
XP_057811530.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 280 | 320 | 1.2e-15 | 58.0 | Pentatricopeptide repeat domain |
XP_057811530.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 285 | 316 | 7.8e-23 | 80.6 | PPR repeat |
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 292 | 320 | 1.9e-29 | 100.5 | PPR repeat |
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 330 | 359 | 1.9e-29 | 100.5 | PPR repeat |
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 365 | 394 | 1.9e-29 | 100.5 | PPR repeat |
XP_057811530.1 |
Pfam | PF01535 |
PPR | Repeat | 473 | 499 | 1.9e-29 | 100.5 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。