Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002491`

染色体: Chr01 坐标: 42620759-42627351 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002491`
名称	SmilChr01G002491
描述	sodium/pyruvate cotransporter BASS2, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42620759 - 42627351 / `-`

ID 对照

NCBI Gene ID	`LOC131025766`
GeneID	`131025766`
locus_tag	`-`
NCBI Name	`LOC131025766`
原始查询	`SmilChr01G002491`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sodium/pyruvate cotransporter BASS2, chloroplastic-like
产物	sodium/pyruvate cotransporter BASS2%2C chloroplastic-like
Arabidopsis	`AT2G26900` (BASS2) Sodium Bile acid symporter family [Source:NCBI gene (formerly Entrezgene);Acc:817231] identity=89.3; qcov=0.747; evalue=0; confidence=high
Rice	`Os01g0645200` (BASS2) - identity=84.9; qcov=0.763; evalue=0; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF01758 (SBF); PF13593 (SBF_like)
InterPro	-
eggNOG	-
NR	GeneID:131025766

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057811537.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057811537.1`
3	Nucleus	细胞核	0.00000	`XP_057811537.1`
4	Chromosome	染色体	0.00000	`XP_057811537.1`
5	Centromere	着丝粒	0.00000	`XP_057811537.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42621339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B130,B85,C39,D11
`Chr1:42621603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr1:42623035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B13
`Chr1:42623399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B7,B98,C45,C58,D11
`Chr1:42623629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B13
`Chr1:42624002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B131,B78,C13
`Chr1:42625621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B64,C2,C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811537.1

452 aa

226

452

SBF_like

SBF

PF13593 SBF_like 168-416 aa PF01758 SBF 175-353 aa

XP_057811540.1

452 aa

226

452

SBF_like

SBF

PF13593 SBF_like 168-416 aa PF01758 SBF 175-353 aa

XP_057811547.1

452 aa

226

452

SBF_like

SBF

PF13593 SBF_like 168-416 aa PF01758 SBF 175-353 aa

XP_057811555.1

451 aa

226

451

SBF_like

SBF

PF13593 SBF_like 167-415 aa PF01758 SBF 174-352 aa

XP_057811560.1

451 aa

226

451

SBF_like

SBF

PF13593 SBF_like 167-415 aa PF01758 SBF 174-352 aa

XP_057811563.1

451 aa

226

451

SBF_like

SBF

PF13593 SBF_like 167-415 aa PF01758 SBF 174-352 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811537.1`	Pfam	`PF13593`	SBF_like	Domain	168	416	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811537.1`	Pfam	`PF01758`	SBF	Family	175	353	6.1e-56	189.8	Sodium Bile acid symporter family
`XP_057811540.1`	Pfam	`PF13593`	SBF_like	Domain	168	416	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811540.1`	Pfam	`PF01758`	SBF	Family	175	353	6.1e-56	189.8	Sodium Bile acid symporter family
`XP_057811547.1`	Pfam	`PF13593`	SBF_like	Domain	168	416	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811547.1`	Pfam	`PF01758`	SBF	Family	175	353	6.1e-56	189.8	Sodium Bile acid symporter family
`XP_057811555.1`	Pfam	`PF13593`	SBF_like	Domain	167	415	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811555.1`	Pfam	`PF01758`	SBF	Family	174	352	6.1e-56	189.9	Sodium Bile acid symporter family
`XP_057811560.1`	Pfam	`PF13593`	SBF_like	Domain	167	415	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811560.1`	Pfam	`PF01758`	SBF	Family	174	352	6.1e-56	189.9	Sodium Bile acid symporter family
`XP_057811563.1`	Pfam	`PF13593`	SBF_like	Domain	167	415	2.1e-14	54.3	SBF-like CPA transporter family (DUF4137)
`XP_057811563.1`	Pfam	`PF01758`	SBF	Family	174	352	6.1e-56	189.9	Sodium Bile acid symporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057955572.1
ATACCAAATGGCCGATGCCATGCCTTATCCACTCACATACTAACTAGACCCTCTCCAAGCATACAATTTTTTGCGCCTTATCTTTGAAAATAAAATAAAATAAAGAAGAAAGAAAATAAAAAGAGGCGCTCTTCTGACTTTGTCTGCCCATTCAATCTCTCGTGTTCCCTTGTCACACCTCAAATTGCTCCCACCAAATCATTTTCTCTCCACTTACCCATTTTGCCCCTCGAATTGCTTATAGAGACAACTGAAGCTTT...

XM_057955554.1
ATACCAAATGGCCGATGCCATGCCTTATCCACTCACATACTAACTAGACCCTCTCCAAGCATACAATTTTTTGCGCCTTATCTTTGAAAATAAAATAAAATAAAGAAGAAAGAAAATAAAAAGAGGCGCTCTTCTGACTTTGTCTGCCCATTCAATCTCTCGTGTTCCCTTGTCACACCTCAAATTGCTCCCACCAAATCATTTTCTCTCCACTTACCCATTTTGCCCCTCGAATTGCTTATAGAGACAACTGAAGCTTT...

CDS

6 records

下载 CDS FASTA

LOC131025766
ATGGTGTCTTTTCTTGGCGCTTCAGTCCATTCCAGTTACTTGAGCTATCCTTTTCCTGGGGAGGCAAATGGAATTCGAATATCTAAAGGTCCTGCTTCGTCAGCTGCTTTTATGAGAAAGAGTGCCACAGGTCCGGAATCAGTACCTGGAAAATCAATGGCTTCCTGTATGACTCTTATAAAAGAAAATCGAAGTTTGAAACTTAGGAGCTCCTTAAGACAGTTTGCTATTGCATACCCGCACAATGTAAATGTTGATAG...

Protein

6 records

下载 Protein FASTA

XP_057811537.1
MVSFLGASVHSSYLSYPFPGEANGIRISKGPASSAAFMRKSATGPESVPGKSMASCMTLIKENRSLKLRSSLRQFAIAYPHNVNVDREYSKFLGTRKSMDARTFQTFSLCSRNPAFYCKATTSGDFSNSTPSQMSQYEKIIETLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYIIKPMLGFFIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA...

XP_057811540.1
MVSFLGASVHSSYLSYPFPGEANGIRISKGPASSAAFMRKSATGPESVPGKSMASCMTLIKENRSLKLRSSLRQFAIAYPHNVNVDREYSKFLGTRKSMDARTFQTFSLCSRNPAFYCKATTSGDFSNSTPSQMSQYEKIIETLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYIIKPMLGFFIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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