当前解析结果
SmilChr01G002531| 统一新 Gene ID | SmilChr01G002531 |
|---|---|
| 名称 | SmilChr01G002531 |
| 描述 | sugar carrier protein C-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 43323101 - 43325080 / - |
| NCBI Gene ID | LOC131026264 |
|---|---|
| GeneID | 131026264 |
| locus_tag | - |
| NCBI Name | LOC131026264 |
| 原始查询 | SmilChr01G002531 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar carrier protein C-like |
| 产物 | sugar carrier protein C-like |
| Arabidopsis | AT1G11260 (STP1)sugar transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:837667] identity=65; qcov=0.961; evalue=0; confidence=high |
| Rice | Os07g0106200 (OsMST3)- identity=65.1; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026264 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812051.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057812051.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812051.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812051.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812051.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:43323265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B97,C1,C17 |
Chr1:43323364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C50,C84 |
Chr1:43323475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,C20 |
Chr1:43323528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C61,C65 |
Chr1:43323583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C50,C76,C84 |
Chr1:43323661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:43323667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:43323688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:43323695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:43323721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:43323737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:43323751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812051.1PF00083
Sugar_tr 30-493 aa
PF07690
MFS_1 81-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812051.1 |
Pfam | PF00083 |
Sugar_tr | Family | 30 | 493 | 2.9e-122 | 409.5 | Sugar (and other) transporter |
XP_057812051.1 |
Pfam | PF07690 |
MFS_1 | Family | 81 | 442 | 1.4e-25 | 90.7 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。