当前解析结果
SmilChr01G002541| 统一新 Gene ID | SmilChr01G002541 |
|---|---|
| 名称 | SmilChr01G002541 |
| 描述 | subtilisin-like protease |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 43467743 - 43470353 / + |
| NCBI Gene ID | LOC131026107 |
|---|---|
| GeneID | 131026107 |
| locus_tag | - |
| NCBI Name | LOC131026107 |
| 原始查询 | SmilChr01G002541 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease |
| 产物 | subtilisin-like protease |
| Arabidopsis | AT1G04110 (SDD1)Subtilase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839287] identity=44.2; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os03g0119300 (OsSub25)- identity=50.5; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026107 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057811863.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057811863.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057811863.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811863.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811863.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:43468207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B60 |
Chr1:43468389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:43468531 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B54,B78,C53 |
Chr1:43468611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B19 |
Chr1:43468775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,B78,C53 |
Chr1:43468845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C17 |
Chr1:43468930 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B130,B56,B74,B96 |
Chr1:43468930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B56,B74,B96 |
Chr1:43469395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C14,C74,C78 |
Chr1:43469527 |
C |
CA |
1bp_insertion | frameshift_variant | 4 | A21,B68,C34,C42 |
Chr1:43469527 |
C |
CA |
1bp_insertion | CDS_variant | 4 | A21,B68,C34,C42 |
Chr1:43469546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811863.1PF05922
Inhibitor_I9 34-116 aa
PF00082
Peptidase_S8 139-563 aa
PF02225
PA 358-446 aa
PF17766
fn3_6 641-739 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811863.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 34 | 116 | 1.4e-15 | 58.4 | Peptidase inhibitor I9 |
XP_057811863.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 139 | 563 | 1.4e-47 | 163.1 | Subtilase family |
XP_057811863.1 |
Pfam | PF02225 |
PA | Domain | 358 | 446 | 4.7e-09 | 37.0 | PA domain |
XP_057811863.1 |
Pfam | PF17766 |
fn3_6 | Domain | 641 | 739 | 1.6e-28 | 99.5 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。