Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002558`

染色体: Chr01 坐标: 43703415-43713574 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002558`
名称	SmilChr01G002558
描述	agamous-like MADS-box protein AGL14
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	43703415 - 43713574 / `-`

ID 对照

NCBI Gene ID	`LOC131026512`
GeneID	`131026512`
locus_tag	`-`
NCBI Name	`LOC131026512`
原始查询	`SmilChr01G002558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL14
产物	agamous-like MADS-box protein AGL14
Arabidopsis	`AT4G22950` (AGL19) AGAMOUS-like 19 [Source:NCBI gene (formerly Entrezgene);Acc:828394] identity=54.7; qcov=1.01; evalue=1.27e-62; confidence=high
Rice	`Os03g0122600` (OsMADS50) - identity=50.2; qcov=1.08; evalue=9.38e-57; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131026512

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812375.1`
2	Chromosome	染色体	0.00000	`XP_057812375.1`
3	Centromere	着丝粒	0.00000	`XP_057812375.1`
4	Chromatin	染色质	0.00000	`XP_057812375.1`
5	Telomere	端粒	0.00000	`XP_057812375.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:43703617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:43703631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:43703647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,B98
`Chr1:43712963`	`A`	`ATC`	2bp_insertion	frameshift_variant	10	B128,B64,B9,B97,C14,C15,C34,C36,C9,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812375.1

211 aa

106

211

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 99-176 aa

XP_057812383.1

210 aa

105

210

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 98-175 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812375.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.9e-25	88.8	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057812375.1`	Pfam	`PF01486`	K-box	Family	99	176	1.5e-23	83.5	K-box region
`XP_057812383.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.8e-25	88.8	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057812383.1`	Pfam	`PF01486`	K-box	Family	98	175	1.5e-23	83.5	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956392.1
TTTACAACTCAACTCCGACAAGTCTCCACTTGTGTTGCAATATTCCCTTTCATTTTAATTTTTAGGCTCTCCCTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTATGTTTGTCGAATTTTGCTAAAATAAGAAATGGATTAGGTTAGTATTTTCCTTTAGTTTATGACCTGCTATTTCCTAAAGCGTCTTTATTCTCATTCCATGGTTGAAAACTTACAAAAAAAGTAAAAACCCCAAACTCTTTCTTGATTTCGGAATC...

XM_057956400.1
GCAATATTCCCTTTCATTTTAATTTTTAGGCTCTCCCTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTATGTTTGTCGAATTTTGCTAAAATAAGAAATGGATTAGGTTAGTATTTTCCTTTAGTTTATGACCTGCTATTTCCTAAAGCGTCTTTATTCTCATTCCATGGTTGAAAACTTACAAAAAAAGTAAAAACCCCAAACTCTTTCTTGATTTCGGAATCTAGGGTTTCCAGATATGCTCCTACTATACACACCAA...

CDS

2 records

下载 CDS FASTA

LOC131026512
ATGGTGAGGGGAAAAACTGAGCTAAAAAGAATCGAAAACGTGACAAATAGGCAGGTTACCTTCTCGAAGCGCAGAAGCGGGCTGTTGAAGAAGGCATTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTCCTTGTCTTCTCTTCCACAGGAAAACTAAGCGAATTCTCAAGTTCCAGTGGGATCAATAAGACCATAGAAAGATACATAAGAAATGAGAAGGCCATTTCAAGTTGGAGTAAAACTTGCATGGATGA...

LOC131026512
ATGGTGAGGGGAAAAACTGAGCTAAAAAGAATCGAAAACGTGACAAATAGGCAGGTTACCTTCTCGAAGCGCAGAAGCGGGCTGTTGAAGAAGGCATTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTCCTTGTCTTCTCTTCCACAGGAAAACTAAGCGAATTCTCAAGTTCCAGCAGTGGGATCAATAAGACCATAGAAAGATACATAAGAAATGAGAAGGCCATTTCAAGTTGGAGTAAAACTTGCATGGA...

Protein

2 records

下载 Protein FASTA

XP_057812375.1
MVRGKTELKRIENVTNRQVTFSKRRSGLLKKAFELSVLCDAEVALLVFSSTGKLSEFSSSSSGINKTIERYIRNEKAISSWSKTCMDENVKFMTNESSSHELHKKIEFLEESQRKLMGEGLDSCSTEELEQVERQLESSLRSIRATKSKLMNEQVDQLKEQEKKLARENTELRKKLHLQRSILAVASQALPAKVETALFIGPPSQTHWQTP

XP_057812383.1
MVRGKTELKRIENVTNRQVTFSKRRSGLLKKAFELSVLCDAEVALLVFSSTGKLSEFSSSSGINKTIERYIRNEKAISSWSKTCMDENVKFMTNESSSHELHKKIEFLEESQRKLMGEGLDSCSTEELEQVERQLESSLRSIRATKSKLMNEQVDQLKEQEKKLARENTELRKKLHLQRSILAVASQALPAKVETALFIGPPSQTHWQTP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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