Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002562`

染色体: Chr01 坐标: 43749250-43751433 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002562`
名称	SmilChr01G002562
描述	uncharacterized SmilChr01G002562
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	43749250 - 43751433 / `+`

ID 对照

NCBI Gene ID	`LOC131026411`
GeneID	`131026411`
locus_tag	`-`
NCBI Name	`LOC131026411`
原始查询	`SmilChr01G002562`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DHBP synthase RibB-like alpha/beta domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836180]; symbol=AT5G60590; hit=AT5G60590; species=arabidopsis; confidence=high
产物	DHBP synthase RibB-like alpha/beta domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836180]; symbol=AT5G60590; hit=AT5G60590; species=arabidopsis; confidence=high
Arabidopsis	`AT5G60590` (AT5G60590) DHBP synthase RibB-like alpha/beta domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836180] identity=72.8; qcov=0.817; evalue=8.76e-115; confidence=high
Rice	`Os03g0201600` - identity=69.1; qcov=0.799; evalue=2.65e-107; confidence=high
GO	GO:0000049 (tRNA binding); GO:0003725 (double-stranded RNA binding); GO:0005737 (cytoplasm); GO:0006450 (regulation of translational fidelity); GO:0016779 (nucleotidyltransferase activity)
KEGG	-
Pfam	PF01300 (Sua5_yciO_yrdC)
InterPro	-
eggNOG	-
NR	GeneID:131026411

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057812266.1`
2	Mitochondrion	线粒体	1.00000	`XP_057812272.1`
3	Mitochondrion matrix	线粒体基质	0.20000	`XP_057812272.1`
4	Nucleus	细胞核	0.00000	`XP_057812266.1`
5	Chromosome	染色体	0.00000	`XP_057812266.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:43749466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:43749478`	`CCT`	`C`	2bp_deletion	frameshift_variant	20	A11,B112,B119,B15,B17,B18,B30,B34,B36,B49,B66,B7,C19,C31,C45,C55,C58,C74,C75,D8
`Chr1:43749517`	`CT`	`C`	1bp_deletion	frameshift_variant	170	A10,A11,A13,A16,A18,A19,A20,A21,A23,A24,A25,A3,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B106,B107,B108,B109,B11,B110,B113,B115,B119,B121,B124,B125,B127,B129,B130,B131,B132,B133,B134,B136,B137,B138,B14,B140,B16,B17,B18,B19,B20,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B37,B4,B40,B42,B43,B44,B47,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B6,B62,B63,B64,B65,B66,B69,B71,B72,B74,B76,B77,B78,B79,B8,B82,B83,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C10,C11,C13,C14,C15,C16,C18,C20,C21,C22,C26,C28,C3,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C43,C44,C45,C46,C47,C48,C49,C5,C51,C53,C54,C56,C60,C61,C62,C67,C68,C69,C7,C73,C74,C77,C78,C80,C81,C82,C83,C85,C86,C87,C9,D1,D10,D11,D6,D7,D8
`Chr1:43750431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:43750713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A24,B78,C34
`Chr1:43750800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:43750901`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B32
`Chr1:43750901`	`TC`	`T`	1bp_deletion	CDS_variant	1	B32
`Chr1:43750904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B88,C14,C43,C74
`Chr1:43750942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812266.1

296 aa

148

296

Sua5_yciO_yrdC

PF01300 Sua5_yciO_yrdC 99-276 aa

XP_057812272.1

279 aa

140

279

Sua5_yciO_yrdC

PF01300 Sua5_yciO_yrdC 82-259 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812266.1`	Pfam	`PF01300`	Sua5_yciO_yrdC	Domain	99	276	3.9e-44	150.9	Telomere recombination
`XP_057812272.1`	Pfam	`PF01300`	Sua5_yciO_yrdC	Domain	82	259	3.3e-44	151.2	Telomere recombination

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956289.1
TATTGCTTTGGAAAGGAAAATATCCTTTATTTTTTAGTAAAAAAAAGACAATAACTTTGTCATGATGGTGGAAATTTTTGCAGTTACTCTTCGCTATAGATACAGATTATAATAGTGGCTAAGAATTTGGAGTTTGTGCTATTCAGTGAAGCTGGCAACGCAGAAATTTGATGAGATTAATAGTTCCAACAAAATTTGCTGAGACCCAAGCTCTGCCCATTCTCTTCACCTCTCTCTTTCAACGCACCGCACGGGTGCGG...

XM_057956283.1
TTTGTCATGATGGTGGAAATTTTTGCAGTTACTCTTCGCTATAGATACAGATTATAATAGTGGCTAAGAATTTGGAGTTTGTGCTATTCAGTGAAGCTGGCAACGCAGAAATTTGATGAGATTAATAGTTCCAACAAAATTTGCTGAGACCCAAGCTCTGCCCATTCTCTTCACCTCTCTCTTTCAACGCACCGCACGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTGCATATATATGTATATGGGTGCGGAGGC...

CDS

2 records

下载 CDS FASTA

LOC131026411
ATGAGATTAATAGTTCCAACAAAATTTGCTGAGACCCAAGCTCTGCCCATTCTCTTCACCTCTCTCTTTCAACGCACCGCACGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTGCATATATATGTATATGGGTGCGGAGGCTGCAATTCCTGCCTACTTCTCCAAGTAGGAAGGGTATTGCAAGTAGGATGGCTTGGAGTTTGGAGAAATGTGATGATGAAACAGTGGAGAATACGACAACGGGAATACTGCGGCC...

LOC131026411
ATGAGATTAATAGTTCCAACAAAATTTGCTGAGACCCAAGCTCTGCCCATTCTCTTCACCTCTCTCTTTCAACGCACCGCACGGGTGCGGAGGCTGCAATTCCTGCCTACTTCTCCAAGTAGGAAGGGTATTGCAAGTAGGATGGCTTGGAGTTTGGAGAAATGTGATGATGAAACAGTGGAGAATACGACAACGGGAATACTGCGGCCGGCAACTGCAGATTATGCAGGAGAGGCGATCGAAGCTGTCAAAACCGGAAA...

Protein

2 records

下载 Protein FASTA

XP_057812266.1
MRLIVPTKFAETQALPILFTSLFQRTARTLSLSLSLSLAAYICIWVRRLQFLPTSPSRKGIASRMAWSLEKCDDETVENTTTGILRPATADYAGEAIEAVKTGKVIAVPTDTLYGFACDACSMEAVHRIYEIKGRKHTSPLAICVGDVQDIPRFATTHHLPLGLLDSLLPGPVTVVLRRGDSSILEKSLNPGLDSIGVRVPDSDFIRLIARGSHSALALTSANLSGQPSSVDVKDFENLWQHCACIYNGGLLPSGPAGST...

XP_057812272.1
MRLIVPTKFAETQALPILFTSLFQRTARVRRLQFLPTSPSRKGIASRMAWSLEKCDDETVENTTTGILRPATADYAGEAIEAVKTGKVIAVPTDTLYGFACDACSMEAVHRIYEIKGRKHTSPLAICVGDVQDIPRFATTHHLPLGLLDSLLPGPVTVVLRRGDSSILEKSLNPGLDSIGVRVPDSDFIRLIARGSHSALALTSANLSGQPSSVDVKDFENLWQHCACIYNGGLLPSGPAGSTVVDLTKPGVFKILRPGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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