Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002580`

染色体: Chr01 坐标: 43928311-43940892 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002580`
名称	SmilChr01G002580
描述	uncharacterized SmilChr01G002580
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	43928311 - 43940892 / `-`

ID 对照

NCBI Gene ID	`LOC131026127`
GeneID	`131026127`
locus_tag	`-`
NCBI Name	`LOC131026127`
原始查询	`SmilChr01G002580`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662]; symbol=AT1G20720; hit=AT1G20720; species=arabidopsis; confidence=high
产物	RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662]; symbol=AT1G20720; hit=AT1G20720; species=arabidopsis; confidence=high
Arabidopsis	`AT1G20720` (AT1G20720) RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662] identity=60.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os09g0551800` - identity=54; qcov=1.03; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006289 (nucleotide-excision repair); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:1990918 (double-strand break repair involved in meiotic recombination)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF06733 (DEAD_2); PF13307 (Helicase_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131026127

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811883.1`
2	Cytosol	细胞质基质	1.00000	`XP_057811883.1`
3	Cytoplasm	细胞质	0.80000	`XP_057811886.1`
4	Chromosome	染色体	0.00000	`XP_057811883.1`
5	Centromere	着丝粒	0.00000	`XP_057811883.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:43928645`	`G`	`GA`	1bp_insertion	frameshift_variant	30	A13,B11,B122,B131,B133,B136,B2,B26,B38,B39,B64,B71,B78,B80,B83,B93,C16,C17,C21,C31,C38,C4,C40,C60,C7,C73,C81,D4,D6,D9
`Chr1:43928647`	`A`	`AG`	1bp_insertion	frameshift_variant	14	B127,B137,B140,B19,B37,B4,B42,B43,B53,B99,C36,C85,C87,D5
`Chr1:43928743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:43934443`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C43
`Chr1:43934443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:43934604`	`TG`	`T`	1bp_deletion	frameshift_variant	5	A19,B117,B70,C28,C65
`Chr1:43934604`	`TG`	`T`	1bp_deletion	CDS_variant	5	A19,B117,B70,C28,C65
`Chr1:43935088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C74
`Chr1:43935321`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C43
`Chr1:43935321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:43935404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr1:43935591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811883.1

735 aa

368

735

DEAD_2

Helicase_C_2

PF06733 DEAD_2 111-275 aa PF13307 Helicase_C_2 512-705 aa

XP_057811886.1

729 aa

364

729

DEAD_2

Helicase_C_2

PF06733 DEAD_2 111-269 aa PF13307 Helicase_C_2 506-699 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811883.1`	Pfam	`PF06733`	DEAD_2	Family	111	275	1.7e-42	145.7	DEAD_2
`XP_057811883.1`	Pfam	`PF13307`	Helicase_C_2	Domain	512	705	4.1e-54	183.9	Helicase C-terminal domain
`XP_057811886.1`	Pfam	`PF06733`	DEAD_2	Family	111	269	1.3e-34	120.1	DEAD_2
`XP_057811886.1`	Pfam	`PF13307`	Helicase_C_2	Domain	506	699	4e-54	183.9	Helicase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009102206.1
TGTTTCGATGATATTCCGAAGACGACAAGTATAAAACTTGCCATTTTCACCGTGTGAAAAAGATACTAAAAATAAGTTTGAGTTAAATTTTGAAAAGATGATGGCGCCACCTTTCTCACAAAATTCCCCTATCTTCCCCAGTTAAAAAAAATGGCGGATTCCAGCACAATCTACATCGGCGGAATCCCGGTGGAGTTCCCGTACCAGCCGTACGGCACTCAGCTGGCCTTCATGAACCAAGTGATCGCGACGCTCAATCG...

XM_057955900.1
ATTGAATCCAGGTTTGGATTCGGCGTTTTCATTTCCCGGCGGCGTCGTGAAATAAATTAAGCAGTTAAAAAAAATGGCGGATTCCAGCACAATCTACATCGGCGGAATCCCGGTGGAGTTCCCGTACCAGCCGTACGGCACTCAGCTGGCCTTCATGAACCAAGTGATCGCGACGCTCAATCGGTCGCAGAGAGACGGCCACTGCCACGCGCTGCTCGAATCTCCCACCGGCACAGGGAAGTCGCTCTCGCTGCTCTGCT...

CDS

2 records

下载 CDS FASTA

LOC131026127
ATGGCGGATTCCAGCACAATCTACATCGGCGGAATCCCGGTGGAGTTCCCGTACCAGCCGTACGGCACTCAGCTGGCCTTCATGAACCAAGTGATCGCGACGCTCAATCGGTCGCAGAGAGACGGCCACTGCCACGCGCTGCTCGAATCTCCCACCGGCACAGGGAAGTCGCTCTCGCTGCTCTGCTCCGCCCTTGCATGGCAGCAGAATCACAAACTTAGAAATATCCGGAATGAGTCCAACTATCATGGGGGCGGCTT...

Protein

2 records

下载 Protein FASTA

XP_057811883.1
MADSSTIYIGGIPVEFPYQPYGTQLAFMNQVIATLNRSQRDGHCHALLESPTGTGKSLSLLCSALAWQQNHKLRNIRNESNYHGGGFIPETQPSGNPAGMEQQRLAPIIFYSSRTHAQISQVIREYKKTTYRVPMAVLGSRKHYCTNPKLLGDKKVDEKCRLLLKNREDYCPESRNVHEVKGHPSLRKGGCHEVHDIEDLVKIGQVVKGCSYFAAHSLVEDAELVFCPYNYIINPNIRKGLEVYMRGSIIILDEAHNIED...

XP_057811886.1
MADSSTIYIGGIPVEFPYQPYGTQLAFMNQVIATLNRSQRDGHCHALLESPTGTGKSLSLLCSALAWQQNHKLRNIRNESNYHGGGFIPETQPSGNPAGMEQQRLAPIIFYSSRTHAQISQVIREYKKTTYRVPMAVLGSRKHYCTNPKLLGDKKVDEKCRLLLKNREDYCPESRNVHEVKGHPSLRKGGCHEVHDIEDLVKIGQVVKAHSLVEDAELVFCPYNYIINPNIRKGLEVYMRGSIIILDEAHNIEDVARDGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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