当前解析结果
SmilChr01G002582| 统一新 Gene ID | SmilChr01G002582 |
|---|---|
| 名称 | SmilChr01G002582 |
| 描述 | uncharacterized SmilChr01G002582 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 43953659 - 43955993 / - |
| NCBI Gene ID | LOC131026226 |
|---|---|
| GeneID | 131026226 |
| locus_tag | - |
| NCBI Name | LOC131026226 |
| 原始查询 | SmilChr01G002582 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267]; symbol=AT5G51920; hit=AT5G51920; species=arabidopsis; confidence=high |
| 产物 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267]; symbol=AT5G51920; hit=AT5G51920; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G51920 (AT5G51920)Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267] identity=45.6; qcov=0.993; evalue=2.32e-160; confidence=high |
| Rice | Os08g0545000- identity=46; qcov=1.1; evalue=2.75e-160; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026226 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057811994.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057811994.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811994.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811994.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811994.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:43953987 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B131 |
Chr1:43954017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:43954162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:43954246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,B52,B91,C40 |
Chr1:43954300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:43954543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B138,B24 |
Chr1:43954702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B52,C2,C34,C36 |
Chr1:43954714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr1:43954840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A24,B107,C5,C56 |
Chr1:43954978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B51,B58,B97,C3 |
Chr1:43955497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B68 |
Chr1:43955518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B68,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。