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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002585

染色体: Chr01 坐标: 43985532-43993901 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002585
名称SmilChr01G002585
描述SPX domain-containing membrane protein At4g22990-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向43985532 - 43993901 / -

ID 对照

NCBI Gene IDLOC131026152
GeneID131026152
locus_tag-
NCBI NameLOC131026152
原始查询SmilChr01G002585

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述SPX domain-containing membrane protein At4g22990-like
产物SPX domain-containing membrane protein At4g22990-like
ArabidopsisAT4G22990 (AT4G22990)
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828398]
identity=79.1; qcov=1.01; evalue=0; confidence=high
RiceOs02g0678200 (OsSPX-MFS2)
-
identity=69.9; qcov=1.01; evalue=0; confidence=high
GOGO:0009705 (plant-type vacuole membrane); GO:0022857 (transmembrane transporter activity); GO:1905011 (transmembrane phosphate ion transport from cytosol to vacuole)
KEGG-
PfamPF00083 (Sugar_tr); PF03105 (SPX); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131026152

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasmic vesicle 细胞质囊泡 0.60000 XP_057811907.1
2 Golgi apparatus 高尔基体 0.60000 XP_057811907.1
3 Secretory vesicle Secretory vesicle 0.40000 XP_057811907.1
4 Trans-golgi network Trans-golgi network 0.40000 XP_057811907.1
5 Vacuole membrane 液泡膜 0.40000 XP_057811907.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:43988944 A AG 1bp_insertion frameshift_variant 2 B33,C78
Chr1:43988944 A AG 1bp_insertion CDS_variant 2 B33,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811907.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811912.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811917.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811924.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811927.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811933.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
XP_057811937.1
693 aa
N
1
346
693
SPX
MFS_1
Sugar_tr
C
PF03105 SPX 108-146 aa PF07690 MFS_1 256-636 aa PF00083 Sugar_tr 260-420 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057811907.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811907.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811907.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811912.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811912.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811912.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811917.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811917.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811917.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811924.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811924.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811924.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811927.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811927.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811927.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811933.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811933.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811933.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter
XP_057811937.1 Pfam PF03105 SPX Domain 108 146 1.1e-11 46.1 SPX domain
XP_057811937.1 Pfam PF07690 MFS_1 Family 256 636 4.8e-24 85.6 Major Facilitator Superfamily
XP_057811937.1 Pfam PF00083 Sugar_tr Family 260 420 2.2e-08 34.1 Sugar (and other) transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057955924.1
AAAAAAAAAAAGATGTAAAAGTAAAAAGTCAGAAATCAACCATTTTGTATCCCGATTCCAAAATTTGATTTTGATTAAGATATCAACAAATCCACCATAAATTTGCTTCACTGCTGAGTCCTCGTGCAAGCCACCTCTCTCTCTCTCTCGCCTCTGCATTTATTTTCTCTCTATCTCTCACTACTCTTTCGCACACAAGCGTGTGTTCCTCCATGTGTGTATCAGCTGCGTCTATGTGTTCGTCTGTCACAATTGTATAG...
XM_057955944.1
CAACCATTTTGTATCCCGATTCCAAAATTTGATTTTGATTAAGATATCAACAAATCCACCATAAATTTGCTTCACTGCTGAGTCCTCGTGCAAGCCACCTCTCTCTCTCTCTCGCCTCTGCATTTATTTTCTCTCTATCTCTCACTACTCTTTCGCACACAAGCGTGTGTTCCTCCATGTGTGTATCAGCTGCGTCTATGTGTTCGTCTGTCACAATTGTATAGCGGATGTTCAGGTTGATATGTCCTGAATCTTAAACA...

CDS

7 records

下载 CDS FASTA
LOC131026152
ATGGTTGCATTCGGGAAAAAGTTGAAGGAGAGGCAAATTCAAGAATGGGAAGGATATTACATCAACTACAAATTAATGAAGAAAAAGGTAAAGCAGTACACAAATCAAATTGAAGCTGGAGCACTGGAACGGCGACATGTTCTCAAGGATTTCTCCAGAATGTTGGATAATCAGATAGAAAAAATTGTTCTTTTTATGCTGGAACAACAAGGCCTACTCGCAAGCAGGATTGCCCAACTGAATGAACAACAAGAGACTCT...
LOC131026152
ATGGTTGCATTCGGGAAAAAGTTGAAGGAGAGGCAAATTCAAGAATGGGAAGGATATTACATCAACTACAAATTAATGAAGAAAAAGGTAAAGCAGTACACAAATCAAATTGAAGCTGGAGCACTGGAACGGCGACATGTTCTCAAGGATTTCTCCAGAATGTTGGATAATCAGATAGAAAAAATTGTTCTTTTTATGCTGGAACAACAAGGCCTACTCGCAAGCAGGATTGCCCAACTGAATGAACAACAAGAGACTCT...

Protein

7 records

下载 Protein FASTA
XP_057811907.1
MVAFGKKLKERQIQEWEGYYINYKLMKKKVKQYTNQIEAGALERRHVLKDFSRMLDNQIEKIVLFMLEQQGLLASRIAQLNEQQETLQEQPDISKISELREAYRAVGQDLLKLLFFVEMNAIGLRKILKKFDKRFGYKFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLADLQDRQGSYLSIYDQPALPLQEPVVDSLKSAVDRLTHSTNFLEFLGQHALIMHDELPSAVDEHIEDQRYHFMSLLLNLANTFLY...
XP_057811912.1
MVAFGKKLKERQIQEWEGYYINYKLMKKKVKQYTNQIEAGALERRHVLKDFSRMLDNQIEKIVLFMLEQQGLLASRIAQLNEQQETLQEQPDISKISELREAYRAVGQDLLKLLFFVEMNAIGLRKILKKFDKRFGYKFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLADLQDRQGSYLSIYDQPALPLQEPVVDSLKSAVDRLTHSTNFLEFLGQHALIMHDELPSAVDEHIEDQRYHFMSLLLNLANTFLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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