Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002587`

染色体: Chr01 坐标: 44006619-44012786 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002587`
名称	SmilChr01G002587
描述	uncharacterized SmilChr01G002587
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44006619 - 44012786 / `-`

ID 对照

NCBI Gene ID	`LOC131026205`
GeneID	`131026205`
locus_tag	`-`
NCBI Name	`LOC131026205`
原始查询	`SmilChr01G002587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:826748]; symbol=AT4G11440; hit=AT4G11440; species=arabidopsis; confidence=medium
产物	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:826748]; symbol=AT4G11440; hit=AT4G11440; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G11440` (AT4G11440) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:826748] identity=61.2; qcov=0.546; evalue=2.69e-125; confidence=medium
Rice	`Os02g0665200` - identity=64.5; qcov=0.425; evalue=7.13e-109; confidence=low
GO	GO:0000095 (S-adenosyl-L-methionine transmembrane transporter activity); GO:0005743 (mitochondrial inner membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131026205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast membrane	叶绿体膜	0.80000	`XP_057811971.1`
2	Chloroplast	叶绿体	0.60000	`XP_057811971.1`
3	Mitochondrion	线粒体	0.20000	`XP_057811971.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057811971.1`
5	Peroxisome membrane	过氧化物酶体膜	0.20000	`XP_057811971.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44007780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:44009521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr1:44009849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,C18,C43
`Chr1:44010473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:44011129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811971.1

635 aa

318

635

Mito_carr

PF00153 Mito_carr 345-426 aa PF00153 Mito_carr 434-519 aa PF00153 Mito_carr 528-618 aa

XP_057811978.1

590 aa

295

590

Mito_carr

PF00153 Mito_carr 345-426 aa PF00153 Mito_carr 434-519 aa PF00153 Mito_carr 528-590 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811971.1`	Pfam	`PF00153`	Mito_carr	Repeat	345	426	6.6e-66	218.8	Mitochondrial carrier protein
`XP_057811971.1`	Pfam	`PF00153`	Mito_carr	Repeat	434	519	6.6e-66	218.8	Mitochondrial carrier protein
`XP_057811971.1`	Pfam	`PF00153`	Mito_carr	Repeat	528	618	6.6e-66	218.8	Mitochondrial carrier protein
`XP_057811978.1`	Pfam	`PF00153`	Mito_carr	Repeat	345	426	5e-55	183.9	Mitochondrial carrier protein
`XP_057811978.1`	Pfam	`PF00153`	Mito_carr	Repeat	434	519	5e-55	183.9	Mitochondrial carrier protein
`XP_057811978.1`	Pfam	`PF00153`	Mito_carr	Repeat	528	590	5e-55	183.9	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955988.1
ATTTCTAATCTCTCTCCGTTTACTTGTTCATTATCGGGCTGCTCAATCTCCAAAACAAAACTGGGGGAAAAAAAGATAAACCCACAATTATATTGATGATCTTCTGGGTTCTGTTATGCATTGGGTTGAATGTGTATCTTTGGCTGTTTGGATACTTTGCCTTATGCGGTGGGTTATGAGTTGTCTAGCAGTTGGTTGCGTCCATTGGAGAAAGGAGATTGGGTTTTGATTGGCTGAGAGAGATAGAGAGAGACACTAGT...

XM_057955995.1
TATTCCGCAAAAACCTCTCTCCGTCGTACAGACGTAGACCCTTTTCCAGTTTCCCCCAACTCCAAGATATTCAAACGCCCAAATCGGCAAATCCCAATTATTATTGTGAAACCACTGCGAAGCAACTCATTTTTTTCAAGGGGTTATGAGTTGTCTAGCAGTTGGTTGCGTCCATTGGAGAAAGGAGATTGGGTTTTGATTGGCTGAGAGAGATAGAGAGAGACACTAGTGATTGGTGATATATGTGCTATATCGTTTAG...

CDS

2 records

下载 CDS FASTA

LOC131026205
ATGAGTGGAGGCCGTGTGTCTCCAAGAACTGAAAAATTCTCTGTCAAATATAAAAGTAATCCATTGCATGGGGCGTCCTTCGAGATTGTAGATGATATTTCTCCTGTAAATGACAAATGTAGCATTAGTAATTGTGATCCCCAACCCTCTGAGAGGTTAAGCACAGCGGACCTAATCTCTGCAGTAGGCTATGCGTGTGGTTATGCTAGGAAGTCTCTCTCTGTTTTTCTGCCTAAGAGTAATGCGGCATACAAATCTAA...

Protein

2 records

下载 Protein FASTA

XP_057811971.1
MSGGRVSPRTEKFSVKYKSNPLHGASFEIVDDISPVNDKCSISNCDPQPSERLSTADLISAVGYACGYARKSLSVFLPKSNAAYKSKVFREGGILHYSTEEGTSHTATSAGDQPCSVFYLSSKEKSIELVEENQEYSRDSHGASSFWRIVLARSKLMEGTSMEDCLLSAVIPSNFGRIYNWMSKIAPCKPKNLVNSEIEINRMVDYYDDCCSTNSGDKSSSFHSLATGISTSKLEILEPLDLSSKNAANFDLKPSTSTCS...

XP_057811978.1
MSGGRVSPRTEKFSVKYKSNPLHGASFEIVDDISPVNDKCSISNCDPQPSERLSTADLISAVGYACGYARKSLSVFLPKSNAAYKSKVFREGGILHYSTEEGTSHTATSAGDQPCSVFYLSSKEKSIELVEENQEYSRDSHGASSFWRIVLARSKLMEGTSMEDCLLSAVIPSNFGRIYNWMSKIAPCKPKNLVNSEIEINRMVDYYDDCCSTNSGDKSSSFHSLATGISTSKLEILEPLDLSSKNAANFDLKPSTSTCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器