当前解析结果
SmilChr01G002591| 统一新 Gene ID | SmilChr01G002591 |
|---|---|
| 名称 | SmilChr01G002591 |
| 描述 | uncharacterized SmilChr01G002591 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 44026712 - 44031417 / + |
| NCBI Gene ID | LOC131008527 |
|---|---|
| GeneID | 131008527 |
| locus_tag | - |
| NCBI Name | LOC131008527 |
| 原始查询 | SmilChr01G002591 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=32.5; qcov=0.086; evalue=3.39e-16; confidence=weak |
| Rice | Os12g0142900- identity=30.9; qcov=0.271; evalue=3.8e-63; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008527 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791409.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057791409.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057791409.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791409.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:44026774 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D5 |
Chr1:44026774 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D5 |
Chr1:44026801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr1:44026808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,C11,C69 |
Chr1:44027003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr1:44027070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,C39,C43 |
Chr1:44027083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,B83,C43 |
Chr1:44027086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:44027105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:44027157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:44027284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,D7 |
Chr1:44027286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791409.1PF00078
RVT_1 524-684 aa
PF17919
RT_RNaseH_2 747-844 aa
PF17917
RT_RNaseH 773-876 aa
PF00075
RNase_H 926-1002 aa
PF13456
RVT_3 928-1032 aa
PF17921
Integrase_H2C2 1122-1175 aa
PF31073
DUF8803 1402-1466 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791409.1 |
Pfam | PF00078 |
RVT_1 | Domain | 524 | 684 | 8.6e-35 | 121.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791409.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 747 | 844 | 2e-22 | 79.8 | RNase H-like domain found in reverse transcriptase |
XP_057791409.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 773 | 876 | 2e-23 | 83.3 | RNase H-like domain found in reverse transcriptase |
XP_057791409.1 |
Pfam | PF00075 |
RNase_H | Domain | 926 | 1002 | 1.9e-07 | 32.1 | RNase H |
XP_057791409.1 |
Pfam | PF13456 |
RVT_3 | Domain | 928 | 1032 | 7.9e-14 | 52.4 | Reverse transcriptase-like |
XP_057791409.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1122 | 1175 | 6.4e-09 | 36.5 | Integrase zinc binding domain |
XP_057791409.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1402 | 1466 | 8.3e-13 | 48.7 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。