Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002610`

染色体: Chr01 坐标: 44330640-44332402 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002610`
名称	SmilChr01G002610
描述	BAG family molecular chaperone regulator 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44330640 - 44332402 / `-`

ID 对照

NCBI Gene ID	`LOC130985102`
GeneID	`130985102`
locus_tag	`-`
NCBI Name	`LOC130985102`
原始查询	`SmilChr01G002610`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BAG family molecular chaperone regulator 1-like
产物	BAG family molecular chaperone regulator 1-like
Arabidopsis	`AT5G07220` (BAG3) BCL-2-associated athano 3 [Source:NCBI gene (formerly Entrezgene);Acc:830613] identity=46.1; qcov=1.04; evalue=2.45e-74; confidence=high
Rice	`Os09g0524800` (OsBAG1) - identity=51.5; qcov=0.748; evalue=2.72e-69; confidence=high
GO	GO:0000774 (adenyl-nucleotide exchange factor activity); GO:0005737 (cytoplasm); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF00240 (ubiquitin); PF02179 (BAG)
InterPro	-
eggNOG	-
NR	GeneID:130985102

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057763858.1`
2	Nucleus	细胞核	0.60000	`XP_057763858.1`
3	Cytosol	细胞质基质	0.60000	`XP_057763875.1`
4	Chromosome	染色体	0.00000	`XP_057763858.1`
5	Centromere	着丝粒	0.00000	`XP_057763858.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44330836`	`TG`	`T`	1bp_deletion	frameshift_variant	110	A10,A13,A15,A18,A20,A21,A25,A3,A5,A9,B1,B100,B103,B105,B106,B108,B109,B112,B118,B120,B122,B124,B125,B126,B128,B133,B134,B137,B138,B140,B15,B2,B21,B23,B24,B26,B27,B29,B3,B31,B32,B34,B35,B40,B44,B47,B48,B51,B52,B54,B55,B56,B6,B60,B62,B64,B65,B66,B7,B70,B71,B73,B74,B79,B8,B83,B85,B9,B92,C11,C13,C17,C2,C20,C21,C23,C27,C31,C32,C33,C34,C35,C37,C39,C43,C47,C48,C51,C53,C54,C55,C56,C58,C59,C6,C60,C63,C67,C7,C74,C76,C78,C79,C8,C80,C83,C86,C87,C9,D9
`Chr1:44330880`	`TTG`	`T`	2bp_deletion	frameshift_variant	120	A13,A15,A16,A18,A2,A20,A21,A22,A25,A3,A5,A9,B1,B100,B101,B103,B105,B106,B108,B112,B113,B117,B118,B120,B122,B125,B126,B127,B131,B132,B133,B134,B137,B138,B14,B140,B2,B21,B23,B24,B26,B27,B29,B3,B32,B34,B35,B37,B4,B40,B44,B45,B47,B48,B5,B52,B53,B54,B56,B59,B6,B60,B62,B64,B65,B70,B71,B83,B85,B9,B92,B97,C10,C11,C12,C13,C15,C17,C2,C20,C21,C23,C25,C27,C31,C32,C33,C35,C37,C39,C41,C43,C44,C45,C47,C48,C5,C51,C53,C54,C55,C58,C6,C60,C63,C67,C68,C69,C7,C73,C74,C76,C78,C79,C8,C80,C82,C83,D3,D9
`Chr1:44330958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:44330966`	`C`	`CT`	1bp_insertion	frameshift_variant	144	A10,A13,A15,A16,A18,A2,A20,A21,A22,A25,A3,A5,A8,A9,B1,B100,B101,B103,B105,B106,B108,B109,B113,B117,B118,B120,B122,B123,B124,B125,B126,B127,B129,B131,B132,B133,B134,B135,B137,B138,B139,B14,B140,B19,B2,B21,B23,B24,B26,B27,B29,B3,B31,B32,B34,B35,B37,B4,B40,B41,B42,B44,B45,B47,B48,B5,B52,B54,B56,B59,B6,B60,B62,B63,B64,B65,B66,B67,B69,B70,B71,B74,B8,B82,B83,B85,B88,B92,B93,B94,B96,C10,C11,C12,C13,C15,C19,C2,C20,C21,C22,C23,C25,C27,C29,C31,C32,C33,C35,C39,C40,C41,C43,C45,C47,C48,C5,C51,C53,C54,C55,C58,C6,C60,C63,C65,C67,C68,C69,C7,C71,C73,C74,C76,C77,C78,C79,C8,C80,C82,C83,D3,D5,D9
`Chr1:44331101`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	A3,B113,B44,B54,B62,C44,C55,C78
`Chr1:44331419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B114,B96,D11
`Chr1:44331700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C38,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763858.1

278 aa

139

278

ubiquitin

BAG

PF00240 ubiquitin 68-125 aa PF02179 BAG 151-226 aa

XP_057763866.1

278 aa

139

278

ubiquitin

BAG

PF00240 ubiquitin 68-125 aa PF02179 BAG 151-226 aa

XP_057763875.1

270 aa

135

270

BAG

PF02179 BAG 143-218 aa

XP_057763884.1

270 aa

135

270

BAG

PF02179 BAG 143-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763858.1`	Pfam	`PF00240`	ubiquitin	Domain	68	125	5.1e-06	26.9	Ubiquitin family
`XP_057763858.1`	Pfam	`PF02179`	BAG	Family	151	226	7.4e-15	55.9	BAG domain
`XP_057763866.1`	Pfam	`PF00240`	ubiquitin	Domain	68	125	5.1e-06	26.9	Ubiquitin family
`XP_057763866.1`	Pfam	`PF02179`	BAG	Family	151	226	7.4e-15	55.9	BAG domain
`XP_057763875.1`	Pfam	`PF02179`	BAG	Family	143	218	7e-15	56.0	BAG domain
`XP_057763884.1`	Pfam	`PF02179`	BAG	Family	143	218	7e-15	56.0	BAG domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057907875.1
CAACAACAAAAAGAAAAAAAGAAAAAAAGAAAAACCAATAACCAAAAATAAAAAAGAAAAGCAACAAACCCAACCAAGACATATTCTCCTTTCCCTAACCACCCCTCCCTCCCCCCATCCCCCCTCTTTTATATATATATATAAATCCTACAAGCATCATTATCATATTATATCTGAAATTTCCAGGGAAACCTCCCTCTATATTGAGCTAGAAACACAGATTTCTGGGGAAAAAATATTAAATCTTTTTGGTGGGATTT...

XM_057907892.1
ATATTCTCCTTTCCCTAACCACCCCTCCCTCCCCCCATCCCCCCTCTTTTATATATATATATAAATCCTACAAGCATCATTATCATATTATATCTGAAATTTCCAGGGAAACCTCCCTCTATATTGAGCTAGAAACACAGATTTCTGGGGAAAAAATATTAAATCTTTTTGGTGGGATTTTCATTAGGCCTTTGGGATTTATATGTATACATAAGTTAAGACACTATGTTGTTGTTGTTCTGACATTTGTGGGTCAGAAT...

CDS

4 records

下载 CDS FASTA

LOC130985102
ATGAATAAGGACTACATGCTGAGAATGAAGTCTAACAAGGCCAACAAAGTCTCCTCTCCCACCGGCGGCGGCGGCGAGGCGGTCGGAGGGTGGGAGGTCCGGCCAGGAGGGATGCTGGTGCAGAAGAGAAACTCTGATTTCAATCACAATGCCAACACTGTTCCAAACATCAAAGTTAGAGTCAAATATGGCTCAATTTACCATCAAATTGTCATCAGCTCTCAAGCCAGTTTTGGGGCAACAGGGGTGCACACACAAGA...

Protein

4 records

下载 Protein FASTA

XP_057763858.1
MNKDYMLRMKSNKANKVSSPTGGGGEAVGGWEVRPGGMLVQKRNSDFNHNANTVPNIKVRVKYGSIYHQIVISSQASFGELKKMVAGATGVHTQDQKLIYKEKERDSKWFLDSAGVRDGSKIVLVEDEVSRERRRLESRNNAKLDKASKEIADIRFEVDTLAKQVATIELEINGGKKVVETVFLSLIELLMTQLIKLDAIAADGDVKLQRRMEVKRVQRYIETLDMLKMRNSNLEKVQQYQQIYKGSISKTFQKQQEMKK...

XP_057763866.1
MNKDYMLRMKSNKANKVSSPTGGGGEAVGGWEVRPGGMLVQKRNSDFNHNANTVPNIKVRVKYGSIYHQIVISSQASFGELKKMVAGATGVHTQDQKLIYKEKERDSKWFLDSAGVRDGSKIVLVEDEVSRERRRLESRNNAKLDKASKEIADIRFEVDTLAKQVATIELEINGGKKVVETVFLSLIELLMTQLIKLDAIAADGDVKLQRRMEVKRVQRYIETLDMLKMRNSNLEKVQQYQQIYKGSISKTFQKQQEMKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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