Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002661`

染色体: Chr01 坐标: 44863352-44866943 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002661`
名称	SmilChr01G002661
描述	uncharacterized SmilChr01G002661
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44863352 - 44866943 / `+`

ID 对照

NCBI Gene ID	`LOC130985530`
GeneID	`130985530`
locus_tag	`-`
NCBI Name	`LOC130985530`
原始查询	`SmilChr01G002661`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822059]; symbol=TRM34; hit=AT3G24630; species=arabidopsis; confidence=weak
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822059]; symbol=TRM34; hit=AT3G24630; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G24630` (TRM34) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822059] identity=31.8; qcov=0.273; evalue=4.88e-17; confidence=weak
Rice	`Os01g0228800` - identity=22.5; qcov=0.95; evalue=2.54e-16; confidence=weak
GO	-
KEGG	-
Pfam	PF14309 (DUF4378)
InterPro	-
eggNOG	-
NR	GeneID:130985530

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057764533.1`
2	Nucleus	细胞核	0.60000	`XP_057764533.1`
3	Cell membrane	细胞膜	0.40000	`XP_057764533.1`
4	Cytosol	细胞质基质	0.20000	`XP_057764533.1`
5	Chromosome	染色体	0.00000	`XP_057764533.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44864340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr1:44864502`	`GT`	`G`	1bp_deletion	frameshift_variant	26	A23,A25,A4,B13,B134,B135,B22,B25,B41,B48,B52,B54,B60,B72,B91,C19,C33,C43,C46,C50,C60,C65,C76,C77,C8,D2
`Chr1:44864504`	`GGT`	`G`	2bp_deletion	frameshift_variant	26	A23,A25,A4,B13,B134,B135,B22,B25,B41,B48,B52,B54,B60,B72,B91,C19,C33,C43,C46,C50,C60,C65,C76,C77,C8,D2
`Chr1:44864534`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B135
`Chr1:44864534`	`TC`	`T`	1bp_deletion	CDS_variant	1	B135
`Chr1:44865162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:44865174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B26,B80,C38,C60
`Chr1:44865229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,A19
`Chr1:44865469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:44866536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B135,B3,B46,B82
`Chr1:44866620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:44866633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764533.1

725 aa

362

725

DUF4378

PF14309 DUF4378 593-717 aa

XP_057764540.1

725 aa

362

725

DUF4378

PF14309 DUF4378 593-717 aa

XP_057764548.1

725 aa

362

725

DUF4378

PF14309 DUF4378 593-717 aa

XP_057764555.1

725 aa

362

725

DUF4378

PF14309 DUF4378 593-717 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764533.1`	Pfam	`PF14309`	DUF4378	Domain	593	717	7.9e-07	30.3	LONGIFOLIA 1/2-like C-terminal domain
`XP_057764540.1`	Pfam	`PF14309`	DUF4378	Domain	593	717	7.9e-07	30.3	LONGIFOLIA 1/2-like C-terminal domain
`XP_057764548.1`	Pfam	`PF14309`	DUF4378	Domain	593	717	7.9e-07	30.3	LONGIFOLIA 1/2-like C-terminal domain
`XP_057764555.1`	Pfam	`PF14309`	DUF4378	Domain	593	717	7.9e-07	30.3	LONGIFOLIA 1/2-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908572.1
AGGGGACCCCTACCATTCAACTTGAAGATTTGGCCTTTTGGTAGCACTCAATTCCCAAAAATGACAAAACATCATCTTCTGCTCCCAATTATTGATTACTACTAAACTAATCACTCATTGCAGAATATGGTACTAAACAATGCAATTAAATGAAAACGGATCCCCATTATTCAAAAACCAAGAAAAGATTCTCTCTCCCACGAACCCAAAATCTGTGTAGTAATAATCAAACTAATTCGTGAAGATAAAAATAAAAATAA...

XM_057908550.1
GGGGACCCCTACCATTCAACTTGAAGATTTGGCCTTTTGGTAGCACTCAATTCCCAAAAATGACAAAACATCATCTTCTGCTCCCAATTATTGATTACTACTAAACTAATCACTCATTGCAGAATATGGTACTAAACAATGCAATTAAATGAAAACGGATCCCCATTATTCAAAAACCAAGAAAAGATTCTCTCTCCCACGAACCCAAAATCTGTGTAGTAATAATCAAACTAATTCGTGAAGATAAAAATAAAAATAAA...

CDS

4 records

下载 CDS FASTA

LOC130985530
ATGCCTCAAGACAGCCTAAGATCCGTTGTTTACCGATCCTTCGTCACGTGTGACGACCCCAAAGGCGTGGCCGACTGTAATAAGACGATCAGAAAATCCAAGAAAACCCAACAAAAAATCAAGAAAACGTCACCACACGGCGAGGAGGAGTTGTGTTTTCAAGTGATGGAGGTCTCCCGAGGCGCAGAGAGGCTCAACCAAGTGGCGGATAGGCCTTCGTCGGAGCATATCGCCACCGACTTGTTGAGAGGCGCTCTGCA...

Protein

4 records

下载 Protein FASTA

XP_057764533.1
MPQDSLRSVVYRSFVTCDDPKGVADCNKTIRKSKKTQQKIKKTSPHGEEELCFQVMEVSRGAERLNQVADRPSSEHIATDLLRGALHLRHSLVMLGKLHKASDFIATKHKEKRPLDLAVNGGGGDDDKPRVSASRDCYDELREVIRESFARQNLLPKEKLVCDVDRKHSELCVDLPSSSSSQASSSSLLLSRSSGCSPSYSVRHERTKQGSSNLIAKLMGLEEVPYAAREEGIPFRRSPLLDIDLPRPNKPQFMVQKTVR...

XP_057764540.1
MPQDSLRSVVYRSFVTCDDPKGVADCNKTIRKSKKTQQKIKKTSPHGEEELCFQVMEVSRGAERLNQVADRPSSEHIATDLLRGALHLRHSLVMLGKLHKASDFIATKHKEKRPLDLAVNGGGGDDDKPRVSASRDCYDELREVIRESFARQNLLPKEKLVCDVDRKHSELCVDLPSSSSSQASSSSLLLSRSSGCSPSYSVRHERTKQGSSNLIAKLMGLEEVPYAAREEGIPFRRSPLLDIDLPRPNKPQFMVQKTVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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