当前解析结果
SmilChr01G002693| 统一新 Gene ID | SmilChr01G002693 |
|---|---|
| 名称 | SmilChr01G002693 |
| 描述 | exosome complex exonuclease RRP44 homolog A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45178570 - 45190535 / + |
| NCBI Gene ID | LOC130985919 |
|---|---|
| GeneID | 130985919 |
| locus_tag | - |
| NCBI Name | LOC130985919 |
| 原始查询 | SmilChr01G002693 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exosome complex exonuclease RRP44 homolog A |
| 产物 | exosome complex exonuclease RRP44 homolog A |
| Arabidopsis | AT2G17510 (EMB2763)ribonuclease II family protein [Source:NCBI gene (formerly Entrezgene);Acc:816257] identity=78; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0129200- identity=75.6; qcov=0.464; evalue=0; confidence=medium |
| GO | GO:0000175 (3'-5'-RNA exonuclease activity); GO:0000176 (nuclear exosome (RNase complex)); GO:0000177 (cytoplasmic exosome (RNase complex)); GO:0003723 (RNA binding); GO:0004519 (endonuclease activity); GO:0016075 (rRNA catabolic process) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00773 (RNB); PF13638 (PIN_4); PF17215 (Rrp44_S1); PF17216 (Rrp44_CSD1); PF17849 (OB_Dis3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985919 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765084.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057765084.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057765084.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057765084.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45178859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B123 |
Chr1:45180396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B39,C25 |
Chr1:45180422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,D10,D11 |
Chr1:45180833 |
AT |
A |
1bp_deletion | frameshift_variant | 62 | A11,A14,A16,A25,A3,A5,A6,A7,B11,B12,B125,B126,B127,B132,B138,B21,B22,B27,B28,B29,B30,B31,B37,B38,B39,B42,B43,B44,B45,B51,B55,B6,B61,B62,B68,B77,B8,B80,B83,B91,B94,B98,C11,C12,C13,C22,C23,C38,C40,C47,C55,C59,C6,C62,C67,C69,C70,C75,C76,D1,D2,D5 |
Chr1:45180960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B72,C33,C46,C65 |
Chr1:45180965 |
CTG |
C |
2bp_deletion | frameshift_variant | 7 | A13,B11,B29,B6,B91,C47,D5 |
Chr1:45181535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,B46,C36 |
Chr1:45181547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:45182941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr1:45183890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr1:45185791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:45187322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765084.1PF13638
PIN_4 54-177 aa
PF17216
Rrp44_CSD1 220-323 aa
PF17849
OB_Dis3 373-440 aa
PF00773
RNB 471-800 aa
PF17215
Rrp44_S1 852-922 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765084.1 |
Pfam | PF13638 |
PIN_4 | Domain | 54 | 177 | 2.9e-20 | 73.6 | PIN domain |
XP_057765084.1 |
Pfam | PF17216 |
Rrp44_CSD1 | Domain | 220 | 323 | 3.2e-13 | 50.4 | Rrp44-like cold shock domain |
XP_057765084.1 |
Pfam | PF17849 |
OB_Dis3 | Domain | 373 | 440 | 1.2e-19 | 70.9 | Dis3-like cold-shock domain 2 (CSD2) |
XP_057765084.1 |
Pfam | PF00773 |
RNB | Domain | 471 | 800 | 1.9e-100 | 337.0 | RNB domain |
XP_057765084.1 |
Pfam | PF17215 |
Rrp44_S1 | Domain | 852 | 922 | 1.8e-07 | 31.7 | S1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。