当前解析结果
SmilChr01G002714| 统一新 Gene ID | SmilChr01G002714 |
|---|---|
| 名称 | SmilChr01G002714 |
| 描述 | histone acetyltransferase type B catalytic subunit |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45393416 - 45398448 / - |
| NCBI Gene ID | LOC130986081 |
|---|---|
| GeneID | 130986081 |
| locus_tag | - |
| NCBI Name | LOC130986081 |
| 原始查询 | SmilChr01G002714 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histone acetyltransferase type B catalytic subunit |
| 产物 | histone acetyltransferase type B catalytic subunit |
| Arabidopsis | AT5G56740 (HAG2)histone acetyltransferase of the GNAT family 2 [Source:NCBI gene (formerly Entrezgene);Acc:835775] identity=54.1; qcov=0.98; evalue=0; confidence=high |
| Rice | Os09g0347800 (OsHAG704)- identity=47.8; qcov=1.01; evalue=4.96e-153; confidence=high |
| GO | GO:0005634 (nucleus); GO:0010485 (histone H4 acetyltransferase activity); GO:0031509 (subtelomeric heterochromatin formation); GO:0043967 (GO:0043967) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF10394 (Hat1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986081 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765343.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057765343.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765343.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765343.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45393704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:45393791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B75 |
Chr1:45393884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B112,B15,B68,C23 |
Chr1:45393950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:45393962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:45394049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B12,B59 |
Chr1:45394479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr1:45398221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:45398262 |
C |
CGG |
2bp_insertion | frameshift_variant | 7 | B24,B7,C35,C45,C58,C60,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765343.1PF10394
Hat1_N 29-196 aa
PF00583
Acetyltransf_1 214-276 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765343.1 |
Pfam | PF10394 |
Hat1_N | Domain | 29 | 196 | 9.9e-28 | 98.1 | Histone acetyl transferase HAT1 N-terminus |
XP_057765343.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 214 | 276 | 5.9e-05 | 24.0 | Acetyltransferase (GNAT) family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。