当前解析结果
SmilChr01G002717| 统一新 Gene ID | SmilChr01G002717 |
|---|---|
| 名称 | SmilChr01G002717 |
| 描述 | probable phospholipase A2 homolog 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45432075 - 45435754 / - |
| NCBI Gene ID | LOC130986121 |
|---|---|
| GeneID | 130986121 |
| locus_tag | - |
| NCBI Name | LOC130986121 |
| 原始查询 | SmilChr01G002717 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phospholipase A2 homolog 1 |
| 产物 | probable phospholipase A2 homolog 1 |
| Arabidopsis | AT2G19690 (PLA2-BETA)phospholipase A2-beta [Source:NCBI gene (formerly Entrezgene);Acc:816488] identity=58.1; qcov=0.824; evalue=2.55e-47; confidence=medium |
| Rice | Os02g0831700 (PLA2-I)- identity=62.3; qcov=0.746; evalue=1.64e-49; confidence=medium |
| GO | GO:0004623 (A2-type glycerophospholipase activity); GO:0005509 (calcium ion binding); GO:0006644 (phospholipid metabolic process); GO:0009555 (pollen development); GO:0009846 (pollen germination); GO:0009860 (pollen tube growth); GO:0016042 (lipid catabolic process); GO:0050482 (arachidonate secretion) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986121 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057765394.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057765394.1 |
| 3 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057765394.1 |
| 4 | Lysosome | 溶酶体 | 0.20000 | XP_057765394.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057765394.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45432471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B112,B19,B44,B75 |
Chr1:45432484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B33 |
Chr1:45435284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B100,C3,C5,C70 |
Chr1:45435310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B33,C48 |
Chr1:45435562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr1:45435611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B15,B48,B89 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。