Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002741`

染色体: Chr01 坐标: 45714358-45719100 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002741`
名称	SmilChr01G002741
描述	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	45714358 - 45719100 / `+`

ID 对照

NCBI Gene ID	`LOC130986322`
GeneID	`130986322`
locus_tag	`-`
NCBI Name	`LOC130986322`
原始查询	`SmilChr01G002741`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
产物	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase%2C mitochondrial
Arabidopsis	`AT4G29540` (LpxA) bacterial transferase hexapeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829075] identity=73.9; qcov=0.84; evalue=5.08e-164; confidence=high
Rice	`Os01g0722100` - identity=67.6; qcov=0.835; evalue=2.62e-151; confidence=high
GO	GO:0008610 (lipid biosynthetic process); GO:0008780 (acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity)
KEGG	smil00540 (Lipopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00132 (Hexapep); PF13720 (Acetyltransf_11)
InterPro	-
eggNOG	-
NR	GeneID:130986322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057765692.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057765692.1`
3	Nucleus	细胞核	0.00000	`XP_057765692.1`
4	Chromosome	染色体	0.00000	`XP_057765692.1`
5	Centromere	着丝粒	0.00000	`XP_057765692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:45717058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr1:45717471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B8,C39,C57,C87
`Chr1:45717475`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C74
`Chr1:45717475`	`GC`	`G`	1bp_deletion	CDS_variant	1	C74
`Chr1:45717480`	`G`	`GA`	1bp_insertion	frameshift_variant	1	C74
`Chr1:45717480`	`G`	`GA`	1bp_insertion	CDS_variant	1	C74
`Chr1:45718021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765692.1

351 aa

176

351

Hexapep

Acetyltransf_11

PF00132 Hexapep 86-119 aa PF00132 Hexapep 181-214 aa PF13720 Acetyltransf_11 252-343 aa

XP_057765704.1

351 aa

176

351

Hexapep

Acetyltransf_11

PF00132 Hexapep 86-119 aa PF00132 Hexapep 181-214 aa PF13720 Acetyltransf_11 252-343 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765692.1`	Pfam	`PF00132`	Hexapep	Repeat	86	119	1.3e-31	107.7	Bacterial transferase hexapeptide (six repeats)
`XP_057765692.1`	Pfam	`PF00132`	Hexapep	Repeat	181	214	1.3e-31	107.7	Bacterial transferase hexapeptide (six repeats)
`XP_057765692.1`	Pfam	`PF13720`	Acetyltransf_11	Domain	252	343	6.8e-20	72.0	Udp N-acetylglucosamine O-acyltransferase; Domain 2
`XP_057765704.1`	Pfam	`PF00132`	Hexapep	Repeat	86	119	1.3e-31	107.7	Bacterial transferase hexapeptide (six repeats)
`XP_057765704.1`	Pfam	`PF00132`	Hexapep	Repeat	181	214	1.3e-31	107.7	Bacterial transferase hexapeptide (six repeats)
`XP_057765704.1`	Pfam	`PF13720`	Acetyltransf_11	Domain	252	343	6.8e-20	72.0	Udp N-acetylglucosamine O-acyltransferase; Domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009089236.1
GTACAACTTTGACTCGCCTTTCTTTTGATTCTGGAGCTACTCCCAAAGATGCAAAGGCGACGCGAGTTCATAAATTCTGCTATTCTTCAACTATTAAACCTATGAATGCCGCAAAATCCCCAAGTTTTGGTAACGATGCTTTTGCTTCTCGGAATTCGAAGGCCATTCTCCTTTGCAGTTCAACGACTCCACCTCCGATGCTTCTCCACTTCACTCCCCTATGTTAAGGAGGAGGAGAAAATGAGTTGTATGGAAACAGG...

XR_009089237.1
GTACAACTTTGACTCGCCTTTCTTTTGATTCTGGAGCTACTCCCAAAGATGCAAAGGCGACGCGAGTTCATAAATTCTGCTATTCTTCAACTATTAAACCTATGAATGCCGCAAAATCCCCAAGTTTTGGTAACGATGCTTTTGCTTCTCGGAATTCGAAGGCCATTCTCCTTTGCAGTTCAACGACTCCACCTCCGATGCTTCTCCACTTCACTCCCCTATGTTAAGGAGGAGGAGAAAATGAGTTGTATGGAAACAGG...

CDS

2 records

下载 CDS FASTA

LOC130986322
ATGCCGCAAAATCCCCAAGTTTTGGTAACGATGCTTTTGCTTCTCGGAATTCGAAGGCCATTCTCCTTTGCAGTTCAACGACTCCACCTCCGATGCTTCTCCACTTCACTCCCCTATGTTAAGGAGGAGGAGAAAATGAGTTGTATGGAAACAGGGGGCAAGTCTAGTTTTATTCATCCATCTGCCGTTGTTCATCCGGATGCCATATTAGGTCAGGGTGTTTCTGTTGGTCCTTTTTGCACAGTTGGACCTTCTGCGAA...

Protein

2 records

下载 Protein FASTA

XP_057765692.1
MPQNPQVLVTMLLLLGIRRPFSFAVQRLHLRCFSTSLPYVKEEEKMSCMETGGKSSFIHPSAVVHPDAILGQGVSVGPFCTVGPSAKLGNGCQLYPGSHVCGHTKIGDGCTLMMGAVVGDDLPGSTVIGNNNLIGHHVVVGTKCQDLKYKPGNECFLEIGDNNEIREYVSIHRSSRPDERTIIGSNNLIMGSCHIAHDCKMGNHNIFANNTLLAGHVNVENYTHTAGATVIHQFCHIGSFSFIGGGSVVSQDVPKYTMVS...

XP_057765704.1
MPQNPQVLVTMLLLLGIRRPFSFAVQRLHLRCFSTSLPYVKEEEKMSCMETGGKSSFIHPSAVVHPDAILGQGVSVGPFCTVGPSAKLGNGCQLYPGSHVCGHTKIGDGCTLMMGAVVGDDLPGSTVIGNNNLIGHHVVVGTKCQDLKYKPGNECFLEIGDNNEIREYVSIHRSSRPDERTIIGSNNLIMGSCHIAHDCKMGNHNIFANNTLLAGHVNVENYTHTAGATVIHQFCHIGSFSFIGGGSVVSQDVPKYTMVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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