Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002742`

染色体: Chr01 坐标: 45719596-45725020 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002742`
名称	SmilChr01G002742
描述	protein FAR1-RELATED SEQUENCE 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	45719596 - 45725020 / `+`

ID 对照

NCBI Gene ID	`LOC130986301`
GeneID	`130986301`
locus_tag	`-`
NCBI Name	`LOC130986301`
原始查询	`SmilChr01G002742`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 2-like
产物	protein FAR1-RELATED SEQUENCE 2-like
Arabidopsis	`AT2G32250` (FRS2) FAR1-related sequence 2 [Source:NCBI gene (formerly Entrezgene);Acc:817785] identity=43.9; qcov=0.927; evalue=0; confidence=medium
Rice	`Os03g0655600` - identity=30.8; qcov=0.82; evalue=8.03e-105; confidence=low
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:130986301

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765662.1`
2	Chromosome	染色体	0.00000	`XP_057765662.1`
3	Centromere	着丝粒	0.00000	`XP_057765662.1`
4	Chromatin	染色质	0.00000	`XP_057765662.1`
5	Telomere	端粒	0.00000	`XP_057765662.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:45720300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr1:45720809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B65,C26,C32
`Chr1:45720844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,A7,B123,B38,B49
`Chr1:45721436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B19,B73
`Chr1:45721657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C47
`Chr1:45721729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr1:45721865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,C33
`Chr1:45721992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B63,B79,D1
`Chr1:45722663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr1:45722989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:45723155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765662.1

811 aa

406

811

FAR1

MULE

SWIM

PF03101 FAR1 68-154 aa PF10551 MULE 236-328 aa PF04434 SWIM 516-549 aa

XP_057765670.1

809 aa

404

809

FAR1

MULE

SWIM

PF03101 FAR1 68-154 aa PF10551 MULE 236-328 aa PF04434 SWIM 516-549 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765662.1`	Pfam	`PF03101`	FAR1	Domain	68	154	1.1e-25	90.9	FAR1 DNA-binding domain
`XP_057765662.1`	Pfam	`PF10551`	MULE	Domain	236	328	4.1e-24	85.5	MULE transposase domain
`XP_057765662.1`	Pfam	`PF04434`	SWIM	Domain	516	549	1.1e-05	25.6	SWIM zinc finger
`XP_057765670.1`	Pfam	`PF03101`	FAR1	Domain	68	154	1.1e-25	90.9	FAR1 DNA-binding domain
`XP_057765670.1`	Pfam	`PF10551`	MULE	Domain	236	328	4e-24	85.5	MULE transposase domain
`XP_057765670.1`	Pfam	`PF04434`	SWIM	Domain	516	549	1.1e-05	25.6	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009089232.1
TAACAATGATTAAAGTATAAAAATATCAGTTAAATATCAAATTAAAAATTCTATATTTTCGATTAGCTACAAAAAAATTAGTATTATGAATCGATAAATTAGTTGAAATAAGATTCAGTCATCGACTCCCAAGTGTAGACGAAGTGGATGCCTGAGTTCTACTGCCAAATTAATTAGGGCTCAAACGGAATTAGTGCAAAATATCGAGGTCAAAATACAAGAAACCGTAAAACCTTCATCTCGATGACTATGACTATGAG...

XR_009089231.1
ACAATGATTAAAGTATAAAAATATCAGTTAAATATCAAATTAAAAATTCTATATTTTCGATTAGCTACAAAAAAATTAGTATTATGAATCGATAAATTAGTTGAAATAAGATTCAGTCATCGACTCCCAAGTGTAGACGAAGTGGATGCCTGAGTTCTACTGCCAAATTAATTAGGGCTCAAACGGAATTAGTGCAAAATATCGAGGTCAAAATACAAGAAACCGTAAAACCTTCATCTCGATGACTATGACTATGAGCG...

CDS

2 records

下载 CDS FASTA

LOC130986301
ATGGAGATTGATTTAGAATTGCCATCGTTGGACATAAGAAATAATGATGGTGGTATTGGTAATGAAGAAATTGTGGCTGATAATGAAATTATGGGAGATGAAGATGGAGTGAATTTGAAAGTCTTGAGTGATAATAGAGGTAGGGTAGAGAGTTACATGCCTCAAAATGGTATGGAATTCGAGACGAAGGAAGCTGCCTATTCTTTCTATAGGGAGTATGCTCGGTCAGTTGGATTTGGCATCACGATAAAAGCTAGTCG...

Protein

2 records

下载 Protein FASTA

XP_057765662.1
MEIDLELPSLDIRNNDGGIGNEEIVADNEIMGDEDGVNLKVLSDNRGRVESYMPQNGMEFETKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSRPQSSTSISQRPCAKTDCKASMHIKKRSEGKWFVYNFVEGHNHEFMPNDFYNTIRGRKNKEADAACHRKGLQLVLDESDVELLLDYFMHMQAEAPGFYYVIDFDAEARMRNVFWVDQKGRHDYASFSDVIFFDAHYIRTKYRIPFVPIVGVNN...

XP_057765670.1
MEIDLELPSLDIRNNDGGIGNEEIVADNEIMGDEDGVNLKVLSDNRGRVESYMPQNGMEFETKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSRPQSSTSISQRPCAKTDCKASMHIKKRSEGKWFVYNFVEGHNHEFMPNDFYNTIRGRKNKEADAACHRKGLQLVLDESDVELLLDYFMHMQAEAPGFYYVIDFDAEARMRNVFWVDQKGRHDYASFSDVIFFDAHYIRTKYRIPFVPIVGVNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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