Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002745`

染色体: Chr01 坐标: 45769517-45777228 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002745`
名称	SmilChr01G002745
描述	uncharacterized SmilChr01G002745
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	45769517 - 45777228 / `-`

ID 对照

NCBI Gene ID	`LOC130986375`
GeneID	`130986375`
locus_tag	`-`
NCBI Name	`LOC130986375`
原始查询	`SmilChr01G002745`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829080]; symbol=AT4G29590; hit=AT4G29590; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829080]; symbol=AT4G29590; hit=AT4G29590; species=arabidopsis; confidence=high
Arabidopsis	`AT4G29590` (AT4G29590) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829080] identity=76.7; qcov=0.865; evalue=5.74e-149; confidence=high
Rice	`Os01g0712600` - identity=79; qcov=0.815; evalue=2.11e-146; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25)
InterPro	-
eggNOG	-
NR	GeneID:130986375

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765766.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057765766.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057765766.1`
4	Nucleus	细胞核	0.00000	`XP_057765766.1`
5	Chromosome	染色体	0.00000	`XP_057765766.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:45772862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,B91
`Chr1:45772875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C1,C20,C41
`Chr1:45774916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C20
`Chr1:45775145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C1,C17,C20
`Chr1:45776204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:45776216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:45776932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C20
`Chr1:45776940`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B18,C18
`Chr1:45776940`	`G`	`GT`	1bp_insertion	CDS_variant	2	B18,C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765766.1

303 aa

152

303

Methyltransf_11

Methyltransf_25

Ubie_methyltran

PF08241 Methyltransf_11 175-237 aa PF13649 Methyltransf_25 176-234 aa PF01209 Ubie_methyltran 195-242 aa

XP_057765773.1

303 aa

152

303

Methyltransf_11

Methyltransf_25

Ubie_methyltran

PF08241 Methyltransf_11 175-237 aa PF13649 Methyltransf_25 176-234 aa PF01209 Ubie_methyltran 195-242 aa

XP_057765775.1

303 aa

152

303

Methyltransf_11

Methyltransf_25

Ubie_methyltran

PF08241 Methyltransf_11 175-237 aa PF13649 Methyltransf_25 176-234 aa PF01209 Ubie_methyltran 195-242 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765766.1`	Pfam	`PF08241`	Methyltransf_11	Domain	175	237	4.1e-11	44.1	Methyltransferase domain
`XP_057765766.1`	Pfam	`PF13649`	Methyltransf_25	Domain	176	234	1.6e-07	32.6	Methyltransferase domain
`XP_057765766.1`	Pfam	`PF01209`	Ubie_methyltran	Family	195	242	9.1e-05	22.6	ubiE/COQ5 methyltransferase family
`XP_057765773.1`	Pfam	`PF08241`	Methyltransf_11	Domain	175	237	4.1e-11	44.1	Methyltransferase domain
`XP_057765773.1`	Pfam	`PF13649`	Methyltransf_25	Domain	176	234	1.6e-07	32.6	Methyltransferase domain
`XP_057765773.1`	Pfam	`PF01209`	Ubie_methyltran	Family	195	242	9.1e-05	22.6	ubiE/COQ5 methyltransferase family
`XP_057765775.1`	Pfam	`PF08241`	Methyltransf_11	Domain	175	237	4.1e-11	44.1	Methyltransferase domain
`XP_057765775.1`	Pfam	`PF13649`	Methyltransf_25	Domain	176	234	1.6e-07	32.6	Methyltransferase domain
`XP_057765775.1`	Pfam	`PF01209`	Ubie_methyltran	Family	195	242	9.1e-05	22.6	ubiE/COQ5 methyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909783.1
ATTTGACAGCGAGGGGAAGGATAAAAGAAGTCTCTAAAATTCAACTTAAAAAAGCCCAACTGATTCCAACACTAAATGAGCTAAAAAATAAAGAGAAAATGGCAAATGGATTGGGCGTGATCAAACTGCGGCATAGTCTGCCGCATTTAGCTGGAGTTGCAGTTACTTTTGCTGCTCTGCCTCCGCCTCCGCTTTCAAGGAGAGTTGCTGCATACAGAGCGCCTCGCAGGGCCGTTTTAGGCCTTGGATTCTCGTTTTTG...

XM_057909790.1
ATTTGACAGCGAGGGGAAGGATAAAAGAAGTCTCTAAAATTCAACTTAAAAAAGCCCAACTGATTCCAACACTAAATGAGCTAAAAAATAAAGAGAAAATGGCAAATGGATTGGGCGTGATCAAACTGCGGCATAGTCTGCCGCATTTAGCTGGAGTTGCAGTTACTTTTGCTGCTCTGCCTCCGCCTCCGCTTTCAAGGAGAGTTGCTGCATACAGAGCGCCTCGCAGGGCCGTTTTAGGCCTTGGATTCTCGTTTTTG...

CDS

3 records

下载 CDS FASTA

LOC130986375
ATGGCAAATGGATTGGGCGTGATCAAACTGCGGCATAGTCTGCCGCATTTAGCTGGAGTTGCAGTTACTTTTGCTGCTCTGCCTCCGCCTCCGCTTTCAAGGAGAGTTGCTGCATACAGAGCGCCTCGCAGGGCCGTTTTAGGCCTTGGATTCTCGTTTTTGTCACAATTCATCAACATGGCTGCTCCCACTCTTGGCGCCAAATCCTTCATCGCTTCTGCCAGGCAAACGGGTGCCGTTGAAAAGGTATTGGAGAATGT...

Protein

3 records

下载 Protein FASTA

XP_057765766.1
MANGLGVIKLRHSLPHLAGVAVTFAALPPPPLSRRVAAYRAPRRAVLGLGFSFLSQFINMAAPTLGAKSFIASARQTGAVEKVLENVEWPEQFPFKEEDFQRFDESPDTLFYESPRFVTHIDDPAIAALTKYYSEVLPPSNTPGVAILDMCSSWVSHYPKGYKQPRIAGMGLNEEELKRNPVLTEYVVQDLNVDPKLPFEDNTFDAITNVVSVDYLSKPIEIFKEMARILKPGGLAVMSFSNRCFWTKAISIWTSTGDTD...

XP_057765773.1
MANGLGVIKLRHSLPHLAGVAVTFAALPPPPLSRRVAAYRAPRRAVLGLGFSFLSQFINMAAPTLGAKSFIASARQTGAVEKVLENVEWPEQFPFKEEDFQRFDESPDTLFYESPRFVTHIDDPAIAALTKYYSEVLPPSNTPGVAILDMCSSWVSHYPKGYKQPRIAGMGLNEEELKRNPVLTEYVVQDLNVDPKLPFEDNTFDAITNVVSVDYLSKPIEIFKEMARILKPGGLAVMSFSNRCFWTKAISIWTSTGDTD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器