Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002752`

染色体: Chr01 坐标: 45841022-45846134 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002752`
名称	SmilChr01G002752
描述	potassium channel AKT1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	45841022 - 45846134 / `+`

ID 对照

NCBI Gene ID	`LOC130986434`
GeneID	`130986434`
locus_tag	`-`
NCBI Name	`LOC130986434`
原始查询	`SmilChr01G002752`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	potassium channel AKT1-like
产物	potassium channel AKT1-like
Arabidopsis	`AT2G26650` (KT1) K+ transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:817206] identity=65.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0648000` (OsAKT1) - identity=60.9; qcov=1.04; evalue=0; confidence=high
GO	GO:0005249 (voltage-gated potassium channel activity); GO:0005515 (protein binding); GO:0006813 (potassium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00023 (Ank); PF00027 (cNMP_binding); PF00520 (Ion_trans); PF07885 (Ion_trans_2); PF11834 (KHA); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130986434

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765824.1`
2	Nucleus	细胞核	0.00000	`XP_057765824.1`
3	Chromosome	染色体	0.00000	`XP_057765824.1`
4	Centromere	着丝粒	0.00000	`XP_057765824.1`
5	Chromatin	染色质	0.00000	`XP_057765824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:45842411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B57,C54
`Chr1:45843006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B41
`Chr1:45843185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:45843504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B2,B89,C82
`Chr1:45843767`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B29
`Chr1:45843767`	`TGG`	`T`	2bp_deletion	CDS_variant	1	B29
`Chr1:45844080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B123,B17
`Chr1:45844110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B114,B131,B87
`Chr1:45845162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:45845196`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr1:45845213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,C39
`Chr1:45845231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B67,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765824.1

856 aa

428

856

Ion_trans

Ion_trans_2

cNMP_binding

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank_2

Ank_3

Ank

KHA

PF00520 Ion_trans 58-306 aa PF07885 Ion_trans_2 244-299 aa PF00027 cNMP_binding 399-484 aa PF13637 Ank_4 528-577 aa PF12796 Ank_2 528-618 aa PF13857 Ank_5 543-594 aa PF13606 Ank_3 556-585 aa PF00023 Ank 556-587 aa PF13637 Ank_4 565-609 aa PF13637 Ank_4 627-674 aa PF12796 Ank_2 628-707 aa PF13606 Ank_3 654-681 aa PF00023 Ank 654-684 aa PF11834 KHA 790-850 aa

XP_057765830.1

767 aa

384

767

Ion_trans

Ion_trans_2

cNMP_binding

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank_2

Ank_3

Ank

KHA

PF00520 Ion_trans 2-217 aa PF07885 Ion_trans_2 155-210 aa PF00027 cNMP_binding 310-395 aa PF13637 Ank_4 439-488 aa PF12796 Ank_2 439-529 aa PF13857 Ank_5 454-505 aa PF13606 Ank_3 467-496 aa PF00023 Ank 467-498 aa PF13637 Ank_4 476-520 aa PF13637 Ank_4 538-585 aa PF12796 Ank_2 539-618 aa PF13606 Ank_3 565-592 aa PF00023 Ank 565-595 aa PF11834 KHA 701-761 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765824.1`	Pfam	`PF00520`	Ion_trans	Family	58	306	2.1e-40	139.2	Ion transport protein
`XP_057765824.1`	Pfam	`PF07885`	Ion_trans_2	Family	244	299	5.4e-13	49.3	Ion channel
`XP_057765824.1`	Pfam	`PF00027`	cNMP_binding	Domain	399	484	2.1e-14	54.0	Cyclic nucleotide-binding domain
`XP_057765824.1`	Pfam	`PF13637`	Ank_4	Repeat	528	577	7.3e-26	90.4	Ankyrin repeats (many copies)
`XP_057765824.1`	Pfam	`PF12796`	Ank_2	Repeat	528	618	9.9e-33	113.3	Ankyrin repeats (3 copies)
`XP_057765824.1`	Pfam	`PF13857`	Ank_5	Repeat	543	594	1.5e-18	67.4	Ankyrin repeats (many copies)
`XP_057765824.1`	Pfam	`PF13606`	Ank_3	Repeat	556	585	3.6e-18	64.3	Ankyrin repeat
`XP_057765824.1`	Pfam	`PF00023`	Ank	Repeat	556	587	5.7e-27	93.0	Ankyrin repeat
`XP_057765824.1`	Pfam	`PF13637`	Ank_4	Repeat	565	609	7.3e-26	90.4	Ankyrin repeats (many copies)
`XP_057765824.1`	Pfam	`PF13637`	Ank_4	Repeat	627	674	7.3e-26	90.4	Ankyrin repeats (many copies)
`XP_057765824.1`	Pfam	`PF12796`	Ank_2	Repeat	628	707	9.9e-33	113.3	Ankyrin repeats (3 copies)
`XP_057765824.1`	Pfam	`PF13606`	Ank_3	Repeat	654	681	3.6e-18	64.3	Ankyrin repeat
`XP_057765824.1`	Pfam	`PF00023`	Ank	Repeat	654	684	5.7e-27	93.0	Ankyrin repeat
`XP_057765824.1`	Pfam	`PF11834`	KHA	Family	790	850	7.3e-16	58.7	KHA, dimerisation domain of potassium ion channel
`XP_057765830.1`	Pfam	`PF00520`	Ion_trans	Family	2	217	2.5e-34	119.3	Ion transport protein
`XP_057765830.1`	Pfam	`PF07885`	Ion_trans_2	Family	155	210	4.8e-13	49.5	Ion channel
`XP_057765830.1`	Pfam	`PF00027`	cNMP_binding	Domain	310	395	1.8e-14	54.2	Cyclic nucleotide-binding domain
`XP_057765830.1`	Pfam	`PF13637`	Ank_4	Repeat	439	488	4e-26	91.2	Ankyrin repeats (many copies)
`XP_057765830.1`	Pfam	`PF12796`	Ank_2	Repeat	439	529	7e-33	113.8	Ankyrin repeats (3 copies)
`XP_057765830.1`	Pfam	`PF13857`	Ank_5	Repeat	454	505	9.9e-19	68.0	Ankyrin repeats (many copies)
`XP_057765830.1`	Pfam	`PF13606`	Ank_3	Repeat	467	496	1.8e-18	65.2	Ankyrin repeat
`XP_057765830.1`	Pfam	`PF00023`	Ank	Repeat	467	498	4.4e-27	93.3	Ankyrin repeat
`XP_057765830.1`	Pfam	`PF13637`	Ank_4	Repeat	476	520	4e-26	91.2	Ankyrin repeats (many copies)
`XP_057765830.1`	Pfam	`PF13637`	Ank_4	Repeat	538	585	4e-26	91.2	Ankyrin repeats (many copies)
`XP_057765830.1`	Pfam	`PF12796`	Ank_2	Repeat	539	618	7e-33	113.8	Ankyrin repeats (3 copies)
`XP_057765830.1`	Pfam	`PF13606`	Ank_3	Repeat	565	592	1.8e-18	65.2	Ankyrin repeat
`XP_057765830.1`	Pfam	`PF00023`	Ank	Repeat	565	595	4.4e-27	93.3	Ankyrin repeat
`XP_057765830.1`	Pfam	`PF11834`	KHA	Family	701	761	6.2e-16	58.9	KHA, dimerisation domain of potassium ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909841.1
GAAACCATAAATAGAAAAAATACGATAATAATTTAGATAGAGAAAAGGAGTATTAATATGGAAAAAAATGAATAAGAAGATAGGAGAAGACAGTGGGTCAAAGGAAGGAAAGAAAGAGTGGATTTGAGTCCCAAAGCCCAACGGCAGAAGACAAGGTTTGTTGAGAGCGAAGGATGTATCGTGGCTGTGGGGACAGAATAAACCAACAATATTAATATTTAGGCATAAAATATTTGACACACCCTTGATTCTCCCGTACC...

XM_057909847.1
GCCCGACATTGACCAGCTCTCCCGCGACGGCAGCCATTACAGCCTCTCCACCACCATTCTTCCCGCTCTCGGCGCCGGAAGCAATCGCAGAATCAAGCTCCGCTCTTTCGTTCTCTCTCCTTATGATCGCCGCTACAGGCTTGGATTGATATGACAGAGTTTGGGAGGCGTTTCTGGTTATTCTGGTTATCTACACGGCTTGGGCGTCTCCGTTTGAGCTCGGCTTTCTTGATAGACCAAGGAGGCCTATGTCTATCTTG...

CDS

2 records

下载 CDS FASTA

LOC130986434
ATGGAGGATTCCTTCACCAACAGAAGAGCTTCATGGCAGCCCGACATTGACCAGCTCTCCCGCGACGGCAGCCATTACAGCCTCTCCACCACCATTCTTCCCGCTCTCGGCGCCGGAAGCAATCGCAGAATCAAGCTCCGCTCTTTCGTTCTCTCTCCTTATGATCGCCGCTACAGAGTTTGGGAGGCGTTTCTGGTTATTCTGGTTATCTACACGGCTTGGGCGTCTCCGTTTGAGCTCGGCTTTCTTGATAGACCAAG...

LOC130986434
ATGTCTATCTTGGACAATGTTGTCAATGGATTCTTCGCGATTGATATCATCCTCACATTCTTCGTAGCGTACTTGGACAGAAGCACGTATCTTCTCGTTGACAATCGTGGGAAGATTGCAAGGAAATATGCAACTTCTTGGTTGGCTTTTGATGTGATTTCCACAATCCCTTCTGAACTTATTTGGTACATCTCCCCAAGGCCTTTGAGGGAATATGGCTTGTTTAACATGCTTCGTCTCTGGCGTCTCAGACGAGTTAG...

Protein

2 records

下载 Protein FASTA

XP_057765824.1
MEDSFTNRRASWQPDIDQLSRDGSHYSLSTTILPALGAGSNRRIKLRSFVLSPYDRRYRVWEAFLVILVIYTAWASPFELGFLDRPRRPMSILDNVVNGFFAIDIILTFFVAYLDRSTYLLVDNRGKIARKYATSWLAFDVISTIPSELIWYISPRPLREYGLFNMLRLWRLRRVSALFARMEKNRNFNYFWVRCAKLICVTVFSVHCAGCFNYLLAAHNDDPTNTWIGKSMPPGVDFRQLSLWFRYVTSMYWSITTLST...

XP_057765830.1
MSILDNVVNGFFAIDIILTFFVAYLDRSTYLLVDNRGKIARKYATSWLAFDVISTIPSELIWYISPRPLREYGLFNMLRLWRLRRVSALFARMEKNRNFNYFWVRCAKLICVTVFSVHCAGCFNYLLAAHNDDPTNTWIGKSMPPGVDFRQLSLWFRYVTSMYWSITTLSTVGYGDLHAVNAKEMVFTVFYMLFNLGLTAYLIGNMTNLVVHGTSKTRHYRDTIQAATSFSQRNQLPSRLQEQMLSHLSLKFRTNSEGLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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