当前解析结果
SmilChr01G002766| 统一新 Gene ID | SmilChr01G002766 |
|---|---|
| 名称 | SmilChr01G002766 |
| 描述 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46051009 - 46056341 / - |
| NCBI Gene ID | LOC130986502 |
|---|---|
| GeneID | 130986502 |
| locus_tag | - |
| NCBI Name | LOC130986502 |
| 原始查询 | SmilChr01G002766 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 |
| 产物 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 |
| Arabidopsis | AT3G26560 (AT3G26560)ATP-dependent RNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:822264] identity=89.4; qcov=0.802; evalue=0; confidence=high |
| Rice | Os06g0343100- identity=77; qcov=0.805; evalue=0; confidence=high |
| GO | GO:0000390 (spliceosomal complex disassembly); GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF00575 (S1); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF13401 (AAA_22); PF21010 (HA2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986502 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765918.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057765918.1 |
| 3 | Nuclear speckle | 核斑点 | 0.60000 | XP_057765918.1 |
| 4 | Chromosome | 染色体 | 0.20000 | XP_057765918.1 |
| 5 | Chromatin | 染色质 | 0.20000 | XP_057765918.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46051991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr1:46052129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,C19,C41,C55 |
Chr1:46052228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B130,B19,B44 |
Chr1:46052930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,B59,B63 |
Chr1:46053052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B100,B111,B3,B77 |
Chr1:46053064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:46053222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr1:46053268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:46053311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,C43,C78 |
Chr1:46053408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr1:46053452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:46053458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,C43,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765918.1PF00575
S1 246-312 aa
PF00270
DEAD 553-702 aa
PF13401
AAA_22 561-693 aa
PF00271
Helicase_C 746-876 aa
PF04408
WHD_HA2 938-966 aa
PF21010
HA2_C 967-1026 aa
PF07717
OB_NTP_bind 1084-1160 aa
XP_057765925.1PF00575
S1 246-312 aa
PF00270
DEAD 553-702 aa
PF13401
AAA_22 561-693 aa
PF00271
Helicase_C 746-876 aa
PF04408
WHD_HA2 938-966 aa
PF21010
HA2_C 967-1026 aa
PF07717
OB_NTP_bind 1084-1160 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765918.1 |
Pfam | PF00575 |
S1 | Domain | 246 | 312 | 3.1e-12 | 47.4 | S1 RNA binding domain |
XP_057765918.1 |
Pfam | PF00270 |
DEAD | Domain | 553 | 702 | 5.3e-08 | 33.5 | DEAD/DEAH box helicase |
XP_057765918.1 |
Pfam | PF13401 |
AAA_22 | Domain | 561 | 693 | 1.1e-06 | 29.7 | AAA domain |
XP_057765918.1 |
Pfam | PF00271 |
Helicase_C | Domain | 746 | 876 | 3.7e-11 | 44.0 | Helicase conserved C-terminal domain |
XP_057765918.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 938 | 966 | 3.7e-11 | 43.5 | Helicase associated domain (HA2), winged-helix |
XP_057765918.1 |
Pfam | PF21010 |
HA2_C | Domain | 967 | 1026 | 6.9e-15 | 56.0 | Helicase associated domain (HA2), ratchet-like |
XP_057765918.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 1084 | 1160 | 9.7e-27 | 93.7 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
XP_057765925.1 |
Pfam | PF00575 |
S1 | Domain | 246 | 312 | 3.1e-12 | 47.4 | S1 RNA binding domain |
XP_057765925.1 |
Pfam | PF00270 |
DEAD | Domain | 553 | 702 | 5.3e-08 | 33.5 | DEAD/DEAH box helicase |
XP_057765925.1 |
Pfam | PF13401 |
AAA_22 | Domain | 561 | 693 | 1.1e-06 | 29.7 | AAA domain |
XP_057765925.1 |
Pfam | PF00271 |
Helicase_C | Domain | 746 | 876 | 3.7e-11 | 44.0 | Helicase conserved C-terminal domain |
XP_057765925.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 938 | 966 | 3.7e-11 | 43.5 | Helicase associated domain (HA2), winged-helix |
XP_057765925.1 |
Pfam | PF21010 |
HA2_C | Domain | 967 | 1026 | 6.9e-15 | 56.0 | Helicase associated domain (HA2), ratchet-like |
XP_057765925.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 1084 | 1160 | 9.7e-27 | 93.7 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。