Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002769`

染色体: Chr01 坐标: 46136304-46143430 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002769`
名称	SmilChr01G002769
描述	DNA-directed RNA polymerases IV and V subunit 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46136304 - 46143430 / `-`

ID 对照

NCBI Gene ID	`LOC130986599`
GeneID	`130986599`
locus_tag	`-`
NCBI Name	`LOC130986599`
原始查询	`SmilChr01G002769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-directed RNA polymerases IV and V subunit 2-like
产物	DNA-directed RNA polymerases IV and V subunit 2-like
Arabidopsis	`AT3G23780` (NRPD2A) nuclear RNA polymerase D2A [Source:NCBI gene (formerly Entrezgene);Acc:821960] identity=64.1; qcov=0.977; evalue=0; confidence=high
Rice	`Os04g0641000` - identity=62.8; qcov=0.979; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005665 (RNA polymerase II, core complex); GO:0006351 (DNA-templated transcription); GO:0032549 (ribonucleoside binding)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam	PF00562 (RNA_pol_Rpb2_6); PF04560 (RNA_pol_Rpb2_7); PF04561 (RNA_pol_Rpb2_2); PF04563 (RNA_pol_Rpb2_1); PF04565 (RNA_pol_Rpb2_3); PF04566 (RNA_pol_Rpb2_4); PF04567 (RNA_pol_Rpb2_5)
InterPro	-
eggNOG	-
NR	GeneID:130986599

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766038.1`
2	Nucleolus	核仁	0.40000	`XP_057766038.1`
3	Nucleoplasm	核质	0.40000	`XP_057766038.1`
4	Chromosome	染色体	0.00000	`XP_057766038.1`
5	Centromere	着丝粒	0.00000	`XP_057766038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46136503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr1:46136546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B3
`Chr1:46136819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr1:46136911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B131,B133
`Chr1:46137559`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:46137787`	`G`	`GC`	1bp_insertion	frameshift_variant	1	B66
`Chr1:46137787`	`G`	`GC`	1bp_insertion	CDS_variant	1	B66
`Chr1:46138573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr1:46138817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,A11,B119,B127
`Chr1:46138833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B19,B44,C19
`Chr1:46138839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B28
`Chr1:46139172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766038.1

1210 aa

605

1210

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

PF04563 RNA_pol_Rpb2_1 67-478 aa PF04561 RNA_pol_Rpb2_2 300-430 aa PF04565 RNA_pol_Rpb2_3 507-565 aa PF04566 RNA_pol_Rpb2_4 605-666 aa PF04567 RNA_pol_Rpb2_5 680-727 aa PF00562 RNA_pol_Rpb2_6 736-1107 aa PF04560 RNA_pol_Rpb2_7 1109-1207 aa

XP_057766044.1

1210 aa

605

1210

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

XP_057766052.1

1210 aa

605

1210

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766038.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	67	478	3.5e-33	115.6	RNA polymerase beta subunit
`XP_057766038.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	300	430	6.9e-10	39.6	RNA polymerase Rpb2, domain 2
`XP_057766038.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	507	565	2.7e-14	53.8	RNA polymerase Rpb2, domain 3
`XP_057766038.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	605	666	5.4e-22	78.4	RNA polymerase Rpb2, domain 4
`XP_057766038.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	680	727	3.2e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057766038.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	736	1107	9.5e-106	354.8	RNA polymerase Rpb2, domain 6
`XP_057766038.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1109	1207	5.1e-27	94.9	RNA polymerase Rpb2, domain 7
`XP_057766044.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	67	478	3.5e-33	115.6	RNA polymerase beta subunit
`XP_057766044.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	300	430	6.9e-10	39.6	RNA polymerase Rpb2, domain 2
`XP_057766044.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	507	565	2.7e-14	53.8	RNA polymerase Rpb2, domain 3
`XP_057766044.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	605	666	5.4e-22	78.4	RNA polymerase Rpb2, domain 4
`XP_057766044.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	680	727	3.2e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057766044.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	736	1107	9.5e-106	354.8	RNA polymerase Rpb2, domain 6
`XP_057766044.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1109	1207	5.1e-27	94.9	RNA polymerase Rpb2, domain 7
`XP_057766052.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	67	478	3.5e-33	115.6	RNA polymerase beta subunit
`XP_057766052.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	300	430	6.9e-10	39.6	RNA polymerase Rpb2, domain 2
`XP_057766052.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	507	565	2.7e-14	53.8	RNA polymerase Rpb2, domain 3
`XP_057766052.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	605	666	5.4e-22	78.4	RNA polymerase Rpb2, domain 4
`XP_057766052.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	680	727	3.2e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057766052.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	736	1107	9.5e-106	354.8	RNA polymerase Rpb2, domain 6
`XP_057766052.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1109	1207	5.1e-27	94.9	RNA polymerase Rpb2, domain 7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910055.1
GATTTATAAAAATGATAAAAGAAAAGAACAATTGAGGAGCAGCAGGCTTAACAGCTGCTACTGTGCTAGTAATTGCTCACACTGCCAAAGTAGAGAACTGAAAACAATTGTTTTGATAGCAGAAGAAAAAAAAAAATTGTGAGTACAATCGGTGCAAGTAGGCTGGAATCGAGATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGCGAGACAAATGGAATTTGATGATGATATATAC...

XM_057910061.1
TAAAAATGATAAAAGAAAAGAACAATTGAGGAGCAGCAGGCTTAACAGCTGCTACTGTGCTAGTAATTGCTCACACTGCCAAAGTAGAGAACTGAAAACAATTGTTTTGATAGCAGAAGAAAAAAAAAAATTGTGAGTACAATCGGTGCAAGTAGGCTGGAATCGAGGCAGATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGCGAGACAAATGGAATTTGATGATGATATATACTT...

CDS

3 records

下载 CDS FASTA

LOC130986599
ATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGCGAGACAAATGGAATTTGATGATGATATATACTTCAACTATTCTGATTCTGAAGATGAGGTGGACTGTGCCCTGCAAGAAGTGGACAAAGGCTTCTTGAAAGGTTTCTGTAAGAAGGCTTCAACAGCGTTTTTTGAGCAATATGGTTTAATCAGCCACCAGATCAATTCTTACAATGACTTTGTTAAGTATGGGATCCAACAAGT...

Protein

3 records

下载 Protein FASTA

XP_057766038.1
MDGWDFIEEAGPSTSSIKARQMEFDDDIYFNYSDSEDEVDCALQEVDKGFLKGFCKKASTAFFEQYGLISHQINSYNDFVKYGIQQVFDSVGEIMIEPGYDPSKRGDGEWRRATLKFGKVTLDRPTFWTGEKFSSADGAKEYLELLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDKVVEKTILNECQTDVNFGRLPVMVKSDLCWMSRHEPNGEEKRDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVA...

XP_057766044.1
MDGWDFIEEAGPSTSSIKARQMEFDDDIYFNYSDSEDEVDCALQEVDKGFLKGFCKKASTAFFEQYGLISHQINSYNDFVKYGIQQVFDSVGEIMIEPGYDPSKRGDGEWRRATLKFGKVTLDRPTFWTGEKFSSADGAKEYLELLPRHAHLQNMTYSSRIKVETHLQVYTEGLSRSDKFKTGVDKVVEKTILNECQTDVNFGRLPVMVKSDLCWMSRHEPNGEEKRDCEFDQGGYFVIKGAEKTFIAQEQICLKRLWVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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