当前解析结果
SmilChr01G002786| 统一新 Gene ID | SmilChr01G002786 |
|---|---|
| 名称 | SmilChr01G002786 |
| 描述 | disease resistance protein RGA5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46331419 - 46332368 / - |
| NCBI Gene ID | LOC131008899 |
|---|---|
| GeneID | 131008899 |
| locus_tag | - |
| NCBI Name | LOC131008899 |
| 原始查询 | SmilChr01G002786 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA5-like |
| 产物 | disease resistance protein RGA5-like |
| Arabidopsis | AT1G55775 (AT1G55775)heavy metal-associated domain protein [Source:NCBI gene (formerly Entrezgene);Acc:28717362] identity=48.1; qcov=0.38; evalue=1.88e-08; confidence=low |
| Rice | Os04g0469000- identity=51.8; qcov=0.394; evalue=1.36e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008899 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791990.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791990.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057791990.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791990.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791990.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46331886 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B105,C39,C9 |
Chr1:46331886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,C39,C9 |
Chr1:46331896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B41,B58 |
Chr1:46331899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,B82 |
Chr1:46331905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B133,C31,C39,C9 |
Chr1:46331911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,C47,D10 |
Chr1:46331922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B133,B83,C26 |
Chr1:46331938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B18,B61,B65,C18 |
Chr1:46331956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:46331970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B47,B8,C47,D10 |
Chr1:46331974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr1:46331981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B66 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。