当前解析结果
SmilChr01G002797| 统一新 Gene ID | SmilChr01G002797 |
|---|---|
| 名称 | SmilChr01G002797 |
| 描述 | disease resistance protein RPS2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46458193 - 46461468 / - |
| NCBI Gene ID | LOC130986953 |
|---|---|
| GeneID | 130986953 |
| locus_tag | - |
| NCBI Name | LOC130986953 |
| 原始查询 | SmilChr01G002797 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPS2 |
| 产物 | disease resistance protein RPS2 |
| Arabidopsis | AT4G26090 (RPS2)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828715] identity=43; qcov=1.02; evalue=0; confidence=medium |
| Rice | Os01g0788500- identity=37.2; qcov=1.05; evalue=0; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986953 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766492.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766492.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766492.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766492.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766492.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46458555 |
TA |
T |
1bp_deletion | frameshift_variant | 14 | A13,B14,B16,B44,B50,B57,B83,B88,B97,C3,C38,C53,C54,C59 |
Chr1:46458745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B57,C54 |
Chr1:46458799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B53 |
Chr1:46458916 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr1:46458916 |
GA |
G |
1bp_deletion | CDS_variant | 1 | A18 |
Chr1:46458927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C82,D11 |
Chr1:46459097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:46459151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,D4 |
Chr1:46459152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B80,C5 |
Chr1:46459244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr1:46459277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,D11 |
Chr1:46459309 |
GA |
G |
1bp_deletion | frameshift_variant | 15 | A13,B14,B16,B44,B50,B57,B70,B83,B88,B97,C3,C38,C53,C54,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766492.1PF00931
NB-ARC 156-319 aa
PF23559
WHD_DRP 407-470 aa
PF13855
LRR_8 520-580 aa
PF23598
LRR_14 539-843 aa
PF13855
LRR_8 571-622 aa
PF23247
LRR_RPS2 678-774 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766492.1 |
Pfam | PF00931 |
NB-ARC | Domain | 156 | 319 | 3.6e-48 | 164.1 | NB-ARC domain |
XP_057766492.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 407 | 470 | 8.4e-10 | 39.3 | Disease resistance protein Winged helix domain |
XP_057766492.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 520 | 580 | 7.5e-16 | 58.4 | Leucine rich repeat |
XP_057766492.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 539 | 843 | 2.4e-13 | 50.3 | Leucine-rich repeat region |
XP_057766492.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 571 | 622 | 7.5e-16 | 58.4 | Leucine rich repeat |
XP_057766492.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 678 | 774 | 5.8e-15 | 56.3 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。