当前解析结果
SmilChr01G002798| 统一新 Gene ID | SmilChr01G002798 |
|---|---|
| 名称 | SmilChr01G002798 |
| 描述 | uncharacterized SmilChr01G002798 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46463070 - 46469602 / + |
| NCBI Gene ID | LOC130986962 |
|---|---|
| GeneID | 130986962 |
| locus_tag | - |
| NCBI Name | LOC130986962 |
| 原始查询 | SmilChr01G002798 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| 产物 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G33080 (AT4G33080)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445] identity=66; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0186700- identity=65.8; qcov=0.979; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986962 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766500.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057766500.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057766500.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766500.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46463260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr1:46463973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B138,C16,C51,D4 |
Chr1:46464007 |
A |
AG |
1bp_insertion | frameshift_variant | 4 | B138,C16,C36,C51 |
Chr1:46464007 |
A |
AG |
1bp_insertion | CDS_variant | 4 | B138,C16,C36,C51 |
Chr1:46465451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B57,C4,C83,C86 |
Chr1:46465676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:46465689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr1:46465721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr1:46465803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:46465825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:46467168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B70 |
Chr1:46467631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766500.1PF00069
Pkinase 87-236 aa
PF07714
PK_Tyr_Ser-Thr 88-235 aa
PF03109
ABC1 160-236 aa
PF00069
Pkinase 289-393 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766500.1 |
Pfam | PF00069 |
Pkinase | Domain | 87 | 236 | 4.5e-65 | 220.4 | Protein kinase domain |
XP_057766500.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 88 | 235 | 3.8e-28 | 99.2 | Protein tyrosine and serine/threonine kinase |
XP_057766500.1 |
Pfam | PF03109 |
ABC1 | Domain | 160 | 236 | 7.7e-07 | 29.2 | ABC1 atypical kinase-like domain |
XP_057766500.1 |
Pfam | PF00069 |
Pkinase | Domain | 289 | 393 | 4.5e-65 | 220.4 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。