Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002799

染色体: Chr01 坐标: 46479327-46490497 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002799
名称SmilChr01G002799
描述uncharacterized SmilChr01G002799
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向46479327 - 46490497 / +

ID 对照

NCBI Gene IDLOC130986986
GeneID130986986
locus_tag-
NCBI NameLOC130986986
原始查询SmilChr01G002799

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述serine/arginine repetitive matrix protein [Source:NCBI gene (formerly Entrezgene);Acc:829101]; symbol=AT4G29790; hit=AT4G29790; species=arabidopsis; confidence=medium
产物serine/arginine repetitive matrix protein [Source:NCBI gene (formerly Entrezgene);Acc:829101]; symbol=AT4G29790; hit=AT4G29790; species=arabidopsis; confidence=medium
ArabidopsisAT4G29790 (AT4G29790)
serine/arginine repetitive matrix protein [Source:NCBI gene (formerly Entrezgene);Acc:829101]
identity=44.9; qcov=1.02; evalue=0; confidence=medium
RiceOs05g0350700
-
identity=34.3; qcov=1.05; evalue=3.76e-169; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986986

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057766519.1
2 Chromosome 染色体 0.00000 XP_057766519.1
3 Centromere 着丝粒 0.00000 XP_057766519.1
4 Chromatin 染色质 0.00000 XP_057766519.1
5 Telomere 端粒 0.00000 XP_057766519.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:46481144 C T EMS_canonical_SNV CDS_variant 1 B35
Chr1:46481354 C T EMS_canonical_SNV CDS_variant 1 B130
Chr1:46481395 C T EMS_canonical_SNV CDS_variant 2 B114,B133
Chr1:46482163 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:46482170 C T EMS_canonical_SNV CDS_variant 1 C12
Chr1:46482185 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:46483083 G A EMS_canonical_SNV CDS_variant 1 A16
Chr1:46483099 C T EMS_canonical_SNV CDS_variant 2 C58,C82
Chr1:46484144 G A EMS_canonical_SNV CDS_variant 2 C11,C69
Chr1:46484226 G A EMS_canonical_SNV CDS_variant 1 B68
Chr1:46484232 G A EMS_canonical_SNV CDS_variant 1 B129
Chr1:46484557 C T EMS_canonical_SNV CDS_variant 2 B105,B75

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057910536.1
ATTCGGGCTCAATATCGGGCCAAAATCAGGTGGAAAAAAAAAAGAAAAGAATTATTTAATAAAACATCTTCTTCGTTTGATTTATGGACCGACCTCTACCTTCACCGATCAACGACTCGCTGTCGACGGTGGTTTGAAGTATTTTTTTCTTCTCTCGAAAATTCAGAGATTACGAGTTGGAGCTTTGTAGATCAAACGTCTTTTTGAAGATTTTAACAGTGATTCTAACAAAAAGTTAACTTTGCAGGCACAGGTTTGTC...
XM_057910550.1
ATTCGGGCTCAATATCGGGCCAAAATCAGGTGGAAAAAAAAAAGAAAAGAATTATTTAATAAAACATCTTCTTCGTTTGATTTATGGACCGACCTCTACCTTCACCGATCAACGACTCGCTGTCGACGGTGGTTTGAAGTATTTTTTTCTTCTCTCGAAAATTCAGAGATTACGAGTTGGAGCTTTGTAGATCAAACGTCTTTTTGAAGATTTTAACAGTGATTCTAACAAAAAGTTAACTTTGCAGGTTTGTCAGTGTC...

CDS

7 records

下载 CDS FASTA
LOC130986986
ATGTCAGCATCTAGCAAATTTGATCTCTCTTCCAGTAGTCCTGATAGGCCATTGTATACATCTGGCCACCGTGGTTCCTATGGTGCCGCCTCACTGGACAGATCAGGTAGCTTTCGGGAGAACTTGGAGAACCCACTTTTATCAAGTCTGCCAAATATGACAAGAAGCAATTCTTCGGTAACTCAGAATGATGTACTCAACTTCTTCCACTGTGTGCGTGTTGATCCAAAGTCTATGGTCGTAGATCATAAGTTGAATAG...
LOC130986986
ATGTCAGCATCTAGCAAATTTGATCTCTCTTCCAGTAGTCCTGATAGGCCATTGTATACATCTGGCCACCGTGGTTCCTATGGTGCCGCCTCACTGGACAGATCAGGTAGCTTTCGGGAGAACTTGGAGAACCCACTTTTATCAAGTCTGCCAAATATGACAAGAAGCAATTCTTCGGTAACTCAGAATGATGTACTCAACTTCTTCCACTGTGTGCGTGTTGATCCAAAGTCTATGGTCGTAGATCATAAGTTGAATAG...

Protein

7 records

下载 Protein FASTA
XP_057766519.1
MSASSKFDLSSSSPDRPLYTSGHRGSYGAASLDRSGSFRENLENPLLSSLPNMTRSNSSVTQNDVLNFFHCVRVDPKSMVVDHKLNRPADFKRLASAAVGMPLEDSLPASSKNKHLTSPSLDDLRRLKSGVRESGTKARERVKIFNDCLSVINKCFPAIPSRKRSRLDALSNDRSNTLLSIDRSASGAGVGKMGLQNHATASGFELEQQKSEERTKNTIPSKRTRTSMADARMDARANHLARPPGSVDKDRDAVRISSSN...
XP_057766523.1
MSASSKFDLSSSSPDRPLYTSGHRGSYGAASLDRSGSFRENLENPLLSSLPNMTRSNSSVTQNDVLNFFHCVRVDPKSMVVDHKLNRPADFKRLASAAVGMPLEDSLPASSKNKHLTSPSLDDLRRLKSGVRESGTKARERVKIFNDCLSVINKCFPAIPSRKRSRLDALSNDRSNTLLSIDRSASGAGVGKMGLQNHATASGFELEQQKSEERTKNTIPSKRTRTSMADARMDARANHLARPPGSVDKDRDAVRISSSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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