当前解析结果
SmilChr01G002807| 统一新 Gene ID | SmilChr01G002807 |
|---|---|
| 名称 | SmilChr01G002807 |
| 描述 | protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46616531 - 46620668 / + |
| NCBI Gene ID | LOC130987075 |
|---|---|
| GeneID | 130987075 |
| locus_tag | - |
| NCBI Name | LOC130987075 |
| 原始查询 | SmilChr01G002807 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like |
| 产物 | protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like |
| Arabidopsis | AT5G20610 (AT5G20610)EEIG1/EHBP1 protein amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832183] identity=45.5; qcov=1.09; evalue=0; confidence=high |
| Rice | Os01g0714100- identity=58.4; qcov=0.359; evalue=1.48e-138; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF01476 (LysM); PF10358 (NT-C2); PF21745 (PMI1_PMIR1-2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987075 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057766653.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057766653.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766653.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766653.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766653.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46617155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C70,D9 |
Chr1:46617321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,D11 |
Chr1:46617339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:46617381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B133 |
Chr1:46617573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:46617600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B73 |
Chr1:46617726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B75 |
Chr1:46617789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C53 |
Chr1:46617818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,C34 |
Chr1:46617874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,C33 |
Chr1:46617907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C29 |
Chr1:46617910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766653.1PF10358
NT-C2 87-233 aa
PF21745
PMI1_PMIR1-2_C 677-819 aa
PF01476
LysM 1079-1124 aa
XP_057766659.1PF10358
NT-C2 87-233 aa
PF21745
PMI1_PMIR1-2_C 677-819 aa
PF01476
LysM 1079-1124 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766653.1 |
Pfam | PF10358 |
NT-C2 | Domain | 87 | 233 | 2.1e-17 | 63.9 | N-terminal C2 in EEIG1 and EHBP1 proteins |
XP_057766653.1 |
Pfam | PF21745 |
PMI1_PMIR1-2_C | Domain | 677 | 819 | 1.2e-54 | 185.6 | PMI1/PMIR1-2, C-terminal domain |
XP_057766653.1 |
Pfam | PF01476 |
LysM | Domain | 1079 | 1124 | 1.2e-08 | 35.5 | LysM domain |
XP_057766659.1 |
Pfam | PF10358 |
NT-C2 | Domain | 87 | 233 | 2.1e-17 | 63.9 | N-terminal C2 in EEIG1 and EHBP1 proteins |
XP_057766659.1 |
Pfam | PF21745 |
PMI1_PMIR1-2_C | Domain | 677 | 819 | 1.2e-54 | 185.6 | PMI1/PMIR1-2, C-terminal domain |
XP_057766659.1 |
Pfam | PF01476 |
LysM | Domain | 1079 | 1124 | 1.2e-08 | 35.5 | LysM domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。