Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002813`

染色体: Chr01 坐标: 46680753-46684903 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002813`
名称	SmilChr01G002813
描述	nuclear transcription factor Y subunit A-3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46680753 - 46684903 / `-`

ID 对照

NCBI Gene ID	`LOC130987129`
GeneID	`130987129`
locus_tag	`-`
NCBI Name	`LOC130987129`
原始查询	`SmilChr01G002813`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit A-3-like
产物	nuclear transcription factor Y subunit A-3-like
Arabidopsis	`AT1G72830` (NF-YA3) nuclear factor Y, subunit A3 [Source:NCBI gene (formerly Entrezgene);Acc:843614] identity=45.9; qcov=0.777; evalue=7.98e-43; confidence=medium
Rice	`Os03g0174900` (OsHAP2C) - identity=48.1; qcov=0.647; evalue=2.53e-48; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex)
KEGG	-
Pfam	PF02045 (CBFB_NFYA)
InterPro	-
eggNOG	-
NR	GeneID:130987129

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766738.1`
2	Chromosome	染色体	0.00000	`XP_057766738.1`
3	Centromere	着丝粒	0.00000	`XP_057766738.1`
4	Chromatin	染色质	0.00000	`XP_057766738.1`
5	Telomere	端粒	0.00000	`XP_057766738.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46682084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C62
`Chr1:46682192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766738.1

286 aa

143

286

CBFB_NFYA

PF02045 CBFB_NFYA 116-221 aa

XP_057766744.1

286 aa

143

286

CBFB_NFYA

PF02045 CBFB_NFYA 116-221 aa

XP_057766750.1

286 aa

143

286

CBFB_NFYA

PF02045 CBFB_NFYA 116-221 aa

XP_057766760.1

286 aa

143

286

CBFB_NFYA

PF02045 CBFB_NFYA 116-221 aa

XP_057766769.1

283 aa

142

283

CBFB_NFYA

PF02045 CBFB_NFYA 113-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766738.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	116	221	1e-36	126.6	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057766744.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	116	221	1e-36	126.6	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057766750.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	116	221	1e-36	126.6	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057766760.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	116	221	1e-36	126.6	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057766769.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	113	218	1e-36	126.6	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057910755.1
AGTATAATAATAATATTAGAGAAGGAGACTGTTAAACAAGAATCCAGAGAGAATCTTGTGAGGGAAACAGTAGAGTATTAAGGGAAGGGAAACATGCCCAATTTCATCCCAACAGTTGTGTTCATTGTTCCTCCAAGTATTGGCACCAGATCCTAAAGCTAAAAATGAGCCCTTAAAGGTCTTTGGTTATGCATCTGGCTTCAGCTACATTCCTAAACTAATGGCTAATATGCACGAGCAGCATTTCTCCCAAACAATAT...

XM_057910786.1
TAATATTAGAGAAGGAGACTGTTAAACAAGAATCCAGAGAGAATCTTGTGAGGGAAACAGTAGAGTATTAAGGGAAGGGAAACATGCCCAATTTCATCCCAACAGTTGTGTTCATTGTTCCTCCAAGTATTGGCACCAGATCCTAAAGAATATGCACGAGCAGCATTTCTCCCAAACAATATCCAAAAATCTCAATTTTGAAGTGGACTGTCCTCCTCAACGAGGCCAGGAAGTGAAGTACATTGACTTTCAACTACAAG...

CDS

5 records

下载 CDS FASTA

LOC130987129
ATGGCTAATATGCACGAGCAGCATTTCTCCCAAACAATATCCAAAAATCTCAATTTTGAAGTGGACTGTCCTCCTCAACGAGGCCAGGAAGTGAAGTACATTGACTTTCAACTACAAGATCAACACTCTTCCTCGACTGAATCAACGAGCCTTTCTCACAAGGAATTCACCGCCATGGGAAAGGCTGGTTCTCAAGATCAATGCGCTTCATCTGACTCCGTACATGATGAAAGCTATGGTAAGCATGGGCAACATATGAA...

Protein

5 records

下载 Protein FASTA

XP_057766738.1
MANMHEQHFSQTISKNLNFEVDCPPQRGQEVKYIDFQLQDQHSSSTESTSLSHKEFTAMGKAGSQDQCASSDSVHDESYGKHGQHMKGGLFLCNPELSINVSHAEITQPIVQLPYAYADPYFTGLFTPYGPHNIIQPQMMAAASGRVPLPVDLPEDGPIYVNAKQYHGILRRRQTRAKLEAQNKLVKTRKPYLHESRHQHALNRVRGSGGRFLSTKKQQSEALAAASAGGVDAFHFGYGEGGGDGTRVSGGGDAILQQSD...

XP_057766744.1
MANMHEQHFSQTISKNLNFEVDCPPQRGQEVKYIDFQLQDQHSSSTESTSLSHKEFTAMGKAGSQDQCASSDSVHDESYGKHGQHMKGGLFLCNPELSINVSHAEITQPIVQLPYAYADPYFTGLFTPYGPHNIIQPQMMAAASGRVPLPVDLPEDGPIYVNAKQYHGILRRRQTRAKLEAQNKLVKTRKPYLHESRHQHALNRVRGSGGRFLSTKKQQSEALAAASAGGVDAFHFGYGEGGGDGTRVSGGGDAILQQSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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