Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002815`

染色体: Chr01 坐标: 46705765-46710864 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002815`
名称	SmilChr01G002815
描述	phospholipid:diacylglycerol acyltransferase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46705765 - 46710864 / `-`

ID 对照

NCBI Gene ID	`LOC130987153`
GeneID	`130987153`
locus_tag	`-`
NCBI Name	`LOC130987153`
原始查询	`SmilChr01G002815`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipid:diacylglycerol acyltransferase 1-like
产物	phospholipid:diacylglycerol acyltransferase 1-like
Arabidopsis	`AT5G13640` (PDAT) phospholipid:diacylglycerol acyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831208] identity=74.8; qcov=1; evalue=0; confidence=high
Rice	`Os09g0444200` (P0046G12.50-1) - identity=74.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02450 (LCAT)
InterPro	-
eggNOG	-
NR	GeneID:130987153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057766779.1`
2	Vacuole	液泡	0.60000	`XP_057766786.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057766779.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057766779.1`
5	Lysosome	溶酶体	0.20000	`XP_057766786.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46707520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr1:46707555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B101,C35
`Chr1:46707708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B87,C59,D10
`Chr1:46708391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B130
`Chr1:46708512`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C2
`Chr1:46708512`	`AC`	`A`	1bp_deletion	CDS_variant	1	C2
`Chr1:46708515`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	C2
`Chr1:46708515`	`ACC`	`A`	2bp_deletion	CDS_variant	1	C2
`Chr1:46708557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766779.1

671 aa

336

671

LCAT

PF02450 LCAT 134-631 aa

XP_057766786.1

515 aa

258

515

LCAT

PF02450 LCAT 3-226 aa PF02450 LCAT 322-475 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766779.1`	Pfam	`PF02450`	LCAT	Family	134	631	5e-62	211.1	Lecithin:cholesterol acyltransferase
`XP_057766786.1`	Pfam	`PF02450`	LCAT	Family	3	226	1e-57	196.9	Lecithin:cholesterol acyltransferase
`XP_057766786.1`	Pfam	`PF02450`	LCAT	Family	322	475	1e-57	196.9	Lecithin:cholesterol acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910796.1
TTCGCCAAAATTTTCAGAGAGTCACGAGTCACCTCTCACCTTCCCTACACAATACACAAACTCTCTCTTTCTCATATACATATTTGTAGATTTTATTCATATTCGTCTCTGCAGAAAAACCACTGGTTCTTCATCGATTTGTGTTTACTGGTTTTGATTGGCTATGGAGCGGTTGATCAAGCTCTCGGAAAGCTCATTTTGCATTCATTTATTGCAAAGCAAATCAGGGTGATACAAGATACGTATAAATGGCGATATTC...

XM_057910803.1
GGGTTGCAAGCGAAGCATCCGGTGGTTTTCGTCCCCGGGATAGTGACGGGGGGGCTCGAATTGTGGGATGGGCACTCTTGTGCTGAGGGGTTGTTCAGAAACAGGCTGTGGGGTGGAACATTTGGTGAAGTCTACAGAAGTTTTCCACTCAGAAGTTGCATTATATATGCAGACCCTTGTGTTGGGTTGAGCACATGTCACTGGATAATGAAACTGGACTAGATCCTCCTGGCATAAAGATCAGACCTGTTTCTGGACTT...

CDS

2 records

下载 CDS FASTA

LOC130987153
ATGGCGATATTCAGGCGTAGAAAAGGCGCCAGTGGTAGAAGGCCTCAATCGGACGAGAAGAAGGAGACATTGACCAAGGAATCGGAGGAAAAATCGGATTCAAAACTCAATTCGCAGCGGAGCTCGCCTCCGGCGGCGGCGGCGAGGAGGAAACGGAATTGTGTGGATAGGTGCTGCTGGTTCGTCGGATGCATTTGCTCGATGTGGTGGTTTTTGTTGTTCCTGTTCAACGCAATGCCGCAGTACGTAACGGAGGCGAT...

LOC130987153
ATGTCACTGGATAATGAAACTGGACTAGATCCTCCTGGCATAAAGATCAGACCTGTTTCTGGACTTGTAGCAGCTGATTACTTCACTCCTGGGTACTTTGTGTGGGCACTTTTGATTGCCAACTTGGCTCGTATAGGATATGAGGACAAGAATATGTTTATGGCAGCATATGATTGGAGGCTTTCATTTCAAAATACTGAGGTTCGAGACCAGACTCTCAGCAGAATGAAAAAAAACATAGAGCTCTTGGTTACGGTTAA...

Protein

2 records

下载 Protein FASTA

XP_057766779.1
MAIFRRRKGASGRRPQSDEKKETLTKESEEKSDSKLNSQRSSPPAAAARRKRNCVDRCCWFVGCICSMWWFLLFLFNAMPQYVTEAITGPLPDPPGLKLAKDGLQAKHPVVFVPGIVTGGLELWDGHSCAEGLFRNRLWGGTFGEVYRRPLCWVEHMSLDNETGLDPPGIKIRPVSGLVAADYFTPGYFVWALLIANLARIGYEDKNMFMAAYDWRLSFQNTEVRDQTLSRMKKNIELLVTVNGGKKVVVVPHSMGALYF...

XP_057766786.1
MSLDNETGLDPPGIKIRPVSGLVAADYFTPGYFVWALLIANLARIGYEDKNMFMAAYDWRLSFQNTEVRDQTLSRMKKNIELLVTVNGGKKVVVVPHSMGALYFLHFMKWVEAPAPMGGGGGPNWCAKHIKAVMNIGGPFLGLPRVVSGLFSAEAKDIAVARAVAPNILDKDVFGFQTLQHVLRMTRTWDSTMSMLLKGGDTIWGGIDWSPEEGHICSPKKNGYDQTTGDNKTLNLTTYSRTKYGRLISFGKEVADLHSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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