Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002820`

染色体: Chr01 坐标: 46760373-46763928 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002820`
名称	SmilChr01G002820
描述	mechanosensitive ion channel protein 10-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46760373 - 46763928 / `+`

ID 对照

NCBI Gene ID	`LOC130987212`
GeneID	`130987212`
locus_tag	`-`
NCBI Name	`LOC130987212`
原始查询	`SmilChr01G002820`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mechanosensitive ion channel protein 10-like
产物	mechanosensitive ion channel protein 10-like
Arabidopsis	`AT5G12080` (MSL10) mechanosensitive channel of small conductance-like 10 [Source:NCBI gene (formerly Entrezgene);Acc:831081] identity=46.2; qcov=0.911; evalue=0; confidence=high
Rice	`Os06g0205600` - identity=47.3; qcov=0.872; evalue=6.22e-170; confidence=high
GO	GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0008381 (mechanosensitive monoatomic ion channel activity); GO:0050982 (detection of mechanical stimulus); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00924 (MS_channel_2nd)
InterPro	-
eggNOG	-
NR	GeneID:130987212

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057766845.1`
2	Nucleus	细胞核	0.00000	`XP_057766845.1`
3	Chromosome	染色体	0.00000	`XP_057766845.1`
4	Centromere	着丝粒	0.00000	`XP_057766845.1`
5	Chromatin	染色质	0.00000	`XP_057766845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46760865`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C57
`Chr1:46760865`	`TG`	`T`	1bp_deletion	CDS_variant	1	C57
`Chr1:46761119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:46761238`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B8
`Chr1:46761238`	`GC`	`G`	1bp_deletion	CDS_variant	1	B8
`Chr1:46761918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:46762204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:46762428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:46763166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:46763649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766845.1

780 aa

390

780

MS_channel_2nd

PF00924 MS_channel_2nd 606-664 aa

XP_057766854.1

731 aa

366

731

MS_channel_2nd

PF00924 MS_channel_2nd 606-664 aa

XP_057766863.1

729 aa

364

729

MS_channel_2nd

PF00924 MS_channel_2nd 606-664 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766845.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	606	664	8.3e-09	36.2	Mechanosensitive ion channel, beta-domain
`XP_057766854.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	606	664	8.3e-09	36.2	Mechanosensitive ion channel, beta-domain
`XP_057766863.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	606	664	8.2e-09	36.2	Mechanosensitive ion channel, beta-domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910880.1
CGAAACTGGAAATATAAAATTCTCTCTCTCAATTGGTCAACGTGCTTACAACTTTTAGAAAGAAATTCTCATATGACAGACAATATTGGGATATTTGTCTCCATGGCTTTTCTCTTTAATATTTTTCTAAAGAGATATAAAAACACCAGAAGTTGAAGCTGCTACCTACTCTCATCAAACACGTAGGAGTAGGATTTTTCCTTTCTTGACTGCAATGAAATGTCAATAATTTTGTGCTCTAAATTCATTACTCATATGAA...

XM_057910862.1
CGAAACTGGAAATATAAAATTCTCTCTCTCAATTGGTCAACGTGCTTACAACTTTTAGAAAGAAATTCTCATATGACAGACAATATTGGGATATTTGTCTCCATGGCTTTTCTCTTTAATATTTTTCTAAAGAGATATAAAAACACCAGAAGTTGAAGCTGCTACCTACTCTCATCAAACACGTAGGAGTAGGATTTTTCCTTTCTTGACTGCAATGAAATGTCAATAATTTTGTGCTCTAAATTCATTACTCATATGAA...

CDS

3 records

下载 CDS FASTA

LOC130987212
ATGGAAAGTGAAATATCATTGGGAGGGAAGGGCGGAAGTTTGGATGTTGTTGTGGAGATTCACTCTCCCAAACCCAATGAATCTCCACCAAAAGATGAAAATTCCAAAGAAAATGGCGATTCCGCATCCAAAACCGGCGATATTCAGATGAAAATGAACTTATTCAACACCGCCGCCGCCGCCGCCGCCGCAGCTTCCACTCAAGCCGCAGCTCCTCCCCCGGCGCAGCTCGTGATTCCGGCTCCATCCCTGGACTCCTC...

Protein

3 records

下载 Protein FASTA

XP_057766845.1
MESEISLGGKGGSLDVVVEIHSPKPNESPPKDENSKENGDSASKTGDIQMKMNLFNTAAAAAAAASTQAAAPPPAQLVIPAPSLDSSSKPPPTPDMRRRTSAYSKPKSRIAEPPFTSSLKSAEPTPASAKPPPPPRANSPNVASSSPSSKPNSGTPKTSAPITPRTPLIGSAGDSDDEDDDEDVYNTDTLKPQQAKRGKKVKAMRAFEWMAFVSITTLLILSKTVNKLKNEAEIWSLQLWKWCVLVLVIFCGHLFTDWVT...

XP_057766854.1
MESEISLGGKGGSLDVVVEIHSPKPNESPPKDENSKENGDSASKTGDIQMKMNLFNTAAAAAAAASTQAAAPPPAQLVIPAPSLDSSSKPPPTPDMRRRTSAYSKPKSRIAEPPFTSSLKSAEPTPASAKPPPPPRANSPNVASSSPSSKPNSGTPKTSAPITPRTPLIGSAGDSDDEDDDEDVYNTDTLKPQQAKRGKKVKAMRAFEWMAFVSITTLLILSKTVNKLKNEAEIWSLQLWKWCVLVLVIFCGHLFTDWVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器