Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002825

染色体: Chr01 坐标: 46850530-46856000 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002825
名称SmilChr01G002825
描述UDP-glucuronic acid decarboxylase 5
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向46850530 - 46856000 / -

ID 对照

NCBI Gene IDLOC130987303
GeneID130987303
locus_tag-
NCBI NameLOC130987303
原始查询SmilChr01G002825

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述UDP-glucuronic acid decarboxylase 5
产物UDP-glucuronic acid decarboxylase 5
ArabidopsisAT2G28760 (UXS6)
UDP-XYL synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:817426]
identity=89.8; qcov=0.934; evalue=0; confidence=high
RiceOs03g0278000 (UXS)
-
identity=88.3; qcov=0.936; evalue=0; confidence=high
GOGO:0005737 (cytoplasm); GO:0042732 (D-xylose metabolic process); GO:0048040 (UDP-glucuronate decarboxylase activity); GO:0070403 (NAD+ binding)
KEGGsmil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
PfamPF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro-
eggNOG-
NRGeneID:130987303

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057766876.1
2 Cytoplasm 细胞质 0.80000 XP_057766876.1
3 Nucleus 细胞核 0.20000 XP_057766877.1
4 Chromosome 染色体 0.00000 XP_057766876.1
5 Centromere 着丝粒 0.00000 XP_057766876.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:46850810 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:46854220 C T EMS_canonical_SNV CDS_variant 3 B110,B41,B82
Chr1:46854254 G A EMS_canonical_SNV CDS_variant 5 A21,B134,B3,B49,C18
Chr1:46854851 G A EMS_canonical_SNV stop_gained 2 D10,D11
Chr1:46854851 G A EMS_canonical_SNV CDS_variant 2 D10,D11
Chr1:46854857 TC T 1bp_deletion frameshift_variant 37 A1,A10,A16,A18,A7,B103,B112,B119,B12,B122,B123,B133,B24,B30,B33,B45,B52,B59,B7,B8,B87,C11,C19,C20,C33,C34,C36,C41,C43,C45,C56,C58,C69,C7,C72,C81,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766876.1
357 aa
N
1
178
357
RmlD_sub_bind
Polysacc_synt_2
Epimerase
3Beta_HSD
GDP_Man_Dehyd
NAD_binding_4
C
PF04321 RmlD_sub_bind 44-311 aa PF02719 Polysacc_synt_2 46-153 aa PF01370 Epimerase 46-280 aa PF01073 3Beta_HSD 47-198 aa PF16363 GDP_Man_Dehyd 47-342 aa PF07993 NAD_binding_4 102-219 aa
XP_057766877.1
346 aa
N
1
173
346
RmlD_sub_bind
Polysacc_synt_2
Epimerase
3Beta_HSD
GDP_Man_Dehyd
NAD_binding_4
C
PF04321 RmlD_sub_bind 33-300 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-208 aa
XP_057766878.1
346 aa
N
1
173
346
RmlD_sub_bind
Polysacc_synt_2
Epimerase
3Beta_HSD
GDP_Man_Dehyd
NAD_binding_4
C
PF04321 RmlD_sub_bind 33-300 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-208 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766876.1 Pfam PF04321 RmlD_sub_bind Domain 44 311 9.8e-08 32.1 RmlD substrate binding domain
XP_057766876.1 Pfam PF02719 Polysacc_synt_2 Family 46 153 3.8e-13 50.0 Polysaccharide biosynthesis protein
XP_057766876.1 Pfam PF01370 Epimerase Family 46 280 3e-46 158.5 NAD dependent epimerase/dehydratase family
XP_057766876.1 Pfam PF01073 3Beta_HSD Family 47 198 2.1e-12 47.4 3-beta hydroxysteroid dehydrogenase/isomerase family
XP_057766876.1 Pfam PF16363 GDP_Man_Dehyd Domain 47 342 1.4e-50 173.3 GDP-mannose 4,6 dehydratase
XP_057766876.1 Pfam PF07993 NAD_binding_4 Family 102 219 2.6e-12 47.2 Male sterility protein
XP_057766877.1 Pfam PF04321 RmlD_sub_bind Domain 33 300 9.1e-08 32.2 RmlD substrate binding domain
XP_057766877.1 Pfam PF02719 Polysacc_synt_2 Family 35 142 3.5e-13 50.1 Polysaccharide biosynthesis protein
XP_057766877.1 Pfam PF01370 Epimerase Family 35 269 2.8e-46 158.6 NAD dependent epimerase/dehydratase family
XP_057766877.1 Pfam PF01073 3Beta_HSD Family 36 187 1.9e-12 47.5 3-beta hydroxysteroid dehydrogenase/isomerase family
XP_057766877.1 Pfam PF16363 GDP_Man_Dehyd Domain 36 331 1.3e-50 173.5 GDP-mannose 4,6 dehydratase
XP_057766877.1 Pfam PF07993 NAD_binding_4 Family 91 208 2.4e-12 47.3 Male sterility protein
XP_057766878.1 Pfam PF04321 RmlD_sub_bind Domain 33 300 9.1e-08 32.2 RmlD substrate binding domain
XP_057766878.1 Pfam PF02719 Polysacc_synt_2 Family 35 142 3.5e-13 50.1 Polysaccharide biosynthesis protein
XP_057766878.1 Pfam PF01370 Epimerase Family 35 269 2.8e-46 158.6 NAD dependent epimerase/dehydratase family
XP_057766878.1 Pfam PF01073 3Beta_HSD Family 36 187 1.9e-12 47.5 3-beta hydroxysteroid dehydrogenase/isomerase family
XP_057766878.1 Pfam PF16363 GDP_Man_Dehyd Domain 36 331 1.3e-50 173.5 GDP-mannose 4,6 dehydratase
XP_057766878.1 Pfam PF07993 NAD_binding_4 Family 91 208 2.4e-12 47.3 Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057910895.1
TTGCGGTCAAATTCTCATTTGACAATCGTTTTGCATAGCAAATTAGATATACAATACAACACAGATCTGCGTGGATCTTATGTGTAAAACTGAAATTTCTATCCATCCGTCTAGTTTTGGATTTATGAAAAATGAAACGTGTCGTAGGTTGGACTGAAGACGAATTGGTGAAGAAGTAAATACGAGAAAAATATTCTACTTAAAATTGGAAAAGGATATCGCAAATGGCTAAAGAAGTATCACATGCTGAAAACAATACG...
XM_057910894.1
TAGTTTTGGATTTATGAAAAATGAAACGTGTCGTAGGTTGGACTGAAGACGAATTGGTGAAGAAGTAAATACGAGAAAAATATTCTACTTAGTAAGAGAAGTAGTCCTCTCACATTTATTGCAATCTTTTTCTTTACGCCTTCACATGTTCTTCGCATCAACTCCGCTGCCTATATAAATCTTGAAACTTTTTACTCATAATATTGCTTATTGTTTTGGTGAAATCTTGCAATCTAGCACCCCCTTCTCTTGCAAGAAAT...

CDS

3 records

下载 CDS FASTA
LOC130987303
ATGGAATTTAGAAATTGGAAAAGGATATCGCAAATGGCTAAAGAAGTATCACATGCTGAAAACAATACGAGCATAAAGTCTCCACCCGAGCCTTCGCCCTTGAGAAAAGCCAAGTTTTTTCAGGCAAACATGAGAATCTTGGTTACTGGCGGTGCCGGATTCATTGGATCTCACTTAGTTGACAAGCTGATGGAAAATGAGAAGAATGAGGTCATTGTTGTGGACAACTACTTTACTGGATCGAAGGACAACTTGAAGCA...
LOC130987303
ATGGCTAAAGAAGTATCACATGCTGAAAACAATACGAGCATAAAGTCTCCACCCGAGCCTTCGCCCTTGAGAAAAGCCAAGTTTTTTCAGGCAAACATGAGAATCTTGGTTACTGGCGGTGCCGGATTCATTGGATCTCACTTAGTTGACAAGCTGATGGAAAATGAGAAGAATGAGGTCATTGTTGTGGACAACTACTTTACTGGATCGAAGGACAACTTGAAGCAATGGATTGGACATCCGAGATTCGAGCTTATTCG...

Protein

3 records

下载 Protein FASTA
XP_057766876.1
MEFRNWKRISQMAKEVSHAENNTSIKSPPEPSPLRKAKFFQANMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLKQWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRDEPLTVQLPGTQTRSFCYVSD...
XP_057766877.1
MAKEVSHAENNTSIKSPPEPSPLRKAKFFQANMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLKQWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRDEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器