Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002864`

染色体: Chr01 坐标: 47228093-47229466 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002864`
名称	SmilChr01G002864
描述	protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	47228093 - 47229466 / `-`

ID 对照

NCBI Gene ID	`LOC130987717`
GeneID	`130987717`
locus_tag	`-`
NCBI Name	`LOC130987717`
原始查询	`SmilChr01G002864`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like
产物	protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like
Arabidopsis	`AT1G19115` (AT1G19115) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:5007705] identity=33; qcov=0.858; evalue=6.81e-16; confidence=low
Rice	`Os09g0439800` (DRO1) - identity=32.3; qcov=1.05; evalue=3.71e-20; confidence=low
GO	GO:0009630 (gravitropism); GO:0040008 (regulation of growth)
KEGG	-
Pfam	PF28425 (LAZY_C)
InterPro	-
eggNOG	-
NR	GeneID:130987717

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057767341.1`
2	Nucleus	细胞核	0.40000	`XP_057767341.1`
3	Cell membrane	细胞膜	0.40000	`XP_057767341.1`
4	Chromosome	染色体	0.00000	`XP_057767341.1`
5	Centromere	着丝粒	0.00000	`XP_057767341.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:47228592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:47228749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:47228878`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B103,B75
`Chr1:47228878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B75
`Chr1:47228894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:47228905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:47228966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B78,C28
`Chr1:47229139`	`GAT`	`G`	2bp_deletion	frameshift_variant	2	B51,B77
`Chr1:47229139`	`GAT`	`G`	2bp_deletion	CDS_variant	2	B51,B77
`Chr1:47229173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B98,C25,C48,C78
`Chr1:47229175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:47229362`	`C`	`CAA`	2bp_insertion	frameshift_variant	73	A1,A13,A20,A3,A5,B1,B100,B105,B115,B122,B123,B125,B127,B128,B133,B134,B135,B14,B15,B16,B25,B28,B33,B4,B44,B45,B50,B52,B53,B54,B55,B60,B64,B65,B66,B70,B75,B88,B89,B90,B92,B97,C11,C13,C16,C18,C19,C2,C27,C30,C34,C36,C37,C38,C42,C50,C54,C60,C61,C69,C7,C72,C73,C77,C78,C79,C8,C80,C83,C9,D2,D3,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767341.1

273 aa

136

273

LAZY_C

PF28425 LAZY_C 50-107 aa PF28425 LAZY_C 124-241 aa

XP_057767350.1

247 aa

124

247

LAZY_C

PF28425 LAZY_C 50-108 aa PF28425 LAZY_C 120-247 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767341.1`	Pfam	`PF28425`	LAZY_C	Family	50	107	5.3e-44	151.6	LAZY/DRO1
`XP_057767341.1`	Pfam	`PF28425`	LAZY_C	Family	124	241	5.3e-44	151.6	LAZY/DRO1
`XP_057767350.1`	Pfam	`PF28425`	LAZY_C	Family	50	108	2.5e-49	169.1	LAZY/DRO1
`XP_057767350.1`	Pfam	`PF28425`	LAZY_C	Family	120	247	2.5e-49	169.1	LAZY/DRO1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911367.1
TATACCTTATCAACCTCATTTCTCATGCTTGTGGGAATTCCATCACCTATTTTTCTCCAATTCCACCCTACAAATATTACAAATTTCACCCACACTTTTTTTTTGGAGAAAAAAATAAATAAAAATAAAGTCAGATTAATCGTTGCTGCCAAGATGAAGATCTTGAGTTGGATGCGAAGCAAGCGCAATGGCAACGGAGGCAGCAACAACAAACCCAATCCACAATCAAAATCATATGAGAAGACGCTGATGCATGAATC...

XM_057911358.1
TATACCTTATCAACCTCATTTCTCATGCTTGTGGGAATTCCATCACCTATTTTTCTCCAATTCCACCCTACAAATATTACAAATTTCACCCACACTTTTTTTTTGGAGAAAAAAATAAATAAAAATAAAGTCAGATTAATCGTTGCTGCCAAGATGAAGATCTTGAGTTGGATGCGAAGCAAGCGCAATGGCAACGGAGGCAGCAACAACAAACCCAATCCACAATCAAAATCATATGAGAAGACGCTGATGCATGAATC...

CDS

2 records

下载 CDS FASTA

LOC130987717
ATGCTTGTGGGAATTCCATCACCTATTTTTCTCCAATTCCACCCTACAAATATTACAAATTTCACCCACACTTTTTTTTTGGAGAAAAAAATAAATAAAAATAAAGTCAGATTAATCGTTGCTGCCAAGATGAAGATCTTGAGTTGGATGCGAAGCAAGCGCAATGGCAACGGAGGCAGCAACAACAAACCCAATCCACAATCAAAATCATATGAGAAGACGCTGATGCATGAATCCTGCAACCAAGAGTTCTCCGATTG...

Protein

2 records

下载 Protein FASTA

XP_057767341.1
MLVGIPSPIFLQFHPTNITNFTHTFFLEKKINKNKVRLIVAAKMKILSWMRSKRNGNGGSNNKPNPQSKSYEKTLMHESCNQEFSDWPNALLAIGTFGNKHSADLEQVVEKENLSVEQILNCLRDGDGRRLESQGSMVERAGKDIQSDKRNRGIGKTSLSFLLKKALLCGGAGFVAAPPIIRDPLPDPKLDHSTMEKILRAMLHKKIYPQRPTPKKCLDMGEEQECEKGTHQSKWDKTDSECKLNQHFHISHLLYYSSLV...

XP_057767350.1
MLVGIPSPIFLQFHPTNITNFTHTFFLEKKINKNKVRLIVAAKMKILSWMRSKRNGNGGSNNKPNPQSKSYEKTLMHESCNQEFSDWPNALLAIGTFGNKHSADLEQVVEKENLSVEQILNCLRDGDGRRLESQGSMVERAGKDIQSDKRNRGIGKTSLSFLLKKALLCGGAGFVAAPPIIRDPLPDPKLDHSTMEKILRAMLHKKIYPQRPTPKKCLDMGEEQECEKGTHQSKWDKTDSEYIVLEI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器