当前解析结果
SmilChr01G002882| 统一新 Gene ID | SmilChr01G002882 |
|---|---|
| 名称 | SmilChr01G002882 |
| 描述 | beta-galactosidase 15-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47438840 - 47442897 / + |
| NCBI Gene ID | LOC130987877 |
|---|---|
| GeneID | 130987877 |
| locus_tag | - |
| NCBI Name | LOC130987877 |
| 原始查询 | SmilChr01G002882 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 15-like |
| 产物 | beta-galactosidase 15-like |
| Arabidopsis | AT1G31740 (BGAL15)beta-galactosidase 15 [Source:NCBI gene (formerly Entrezgene);Acc:840061] identity=61.5; qcov=0.993; evalue=0; confidence=high |
| Rice | Os01g0533400 (OsBgal5)- identity=53.2; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987877 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057767562.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057767562.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057767562.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767562.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767562.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47438938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:47439103 |
T |
TAA |
2bp_insertion | frameshift_variant | 1 | C34 |
Chr1:47439103 |
T |
TAA |
2bp_insertion | CDS_variant | 1 | C34 |
Chr1:47439452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:47440007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:47440205 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | A22,B42,B43,C70,C85,C87 |
Chr1:47440873 |
C |
CAT |
2bp_insertion | frameshift_variant | 2 | B91,C57 |
Chr1:47440873 |
C |
CAT |
2bp_insertion | CDS_variant | 2 | B91,C57 |
Chr1:47440892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:47441041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B112,C74,C83 |
Chr1:47441098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B108,C23 |
Chr1:47441561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767562.1PF01301
Glyco_hydro_35 36-340 aa
PF02449
Glyco_hydro_42 57-188 aa
PF17834
GHD 364-418 aa
PF21467
BetaGal_gal-bd 476-541 aa
PF21467
BetaGal_gal-bd 623-714 aa
PF02140
SUEL_Lectin 751-829 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767562.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 36 | 340 | 1.5e-118 | 396.8 | Glycosyl hydrolases family 35 |
XP_057767562.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 57 | 188 | 0.00013 | 22.2 | Beta-galactosidase |
XP_057767562.1 |
Pfam | PF17834 |
GHD | Domain | 364 | 418 | 7.9e-23 | 80.6 | Beta-sandwich domain in beta galactosidase |
XP_057767562.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 476 | 541 | 3e-32 | 111.3 | Beta-galactosidase, galactose-binding domain |
XP_057767562.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 623 | 714 | 3e-32 | 111.3 | Beta-galactosidase, galactose-binding domain |
XP_057767562.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 751 | 829 | 1.6e-14 | 54.8 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。