当前解析结果
SmilChr01G002906| 统一新 Gene ID | SmilChr01G002906 |
|---|---|
| 名称 | SmilChr01G002906 |
| 描述 | sucrose synthase |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47752984 - 47758081 / - |
| NCBI Gene ID | LOC130988039 |
|---|---|
| GeneID | 130988039 |
| locus_tag | - |
| NCBI Name | LOC130988039 |
| 原始查询 | SmilChr01G002906 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose synthase |
| 产物 | sucrose synthase |
| Arabidopsis | AT3G43190 (SUS4)sucrose synthase 4 [Source:NCBI gene (formerly Entrezgene);Acc:823393] identity=79.7; qcov=0.999; evalue=0; confidence=high |
| Rice | Os03g0401300 (SUS1)- identity=73.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF13692 (Glyco_trans_1_4); PF24861 (SUS_N); PF24862 (SUS_EPBD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057767771.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057767771.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767771.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767771.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767771.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47753424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,A24,B26 |
Chr1:47753568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,C85,C87 |
Chr1:47753571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B100,B131,B60,C48 |
Chr1:47753579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B100,B131,C48 |
Chr1:47753634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:47753817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr1:47753841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:47753871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:47753925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B123,B3,C1,D7 |
Chr1:47753946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:47753961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:47754033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767771.1PF24861
SUS_N 8-120 aa
PF24862
SUS_EPBD 155-242 aa
PF00862
GT-B_Sucrose_synth 265-553 aa
PF00534
Glycos_transf_1 565-727 aa
PF13692
Glyco_trans_1_4 571-725 aa
XP_057767779.1PF24861
SUS_N 8-120 aa
PF24862
SUS_EPBD 155-242 aa
PF00862
GT-B_Sucrose_synth 265-553 aa
PF00534
Glycos_transf_1 565-727 aa
PF13692
Glyco_trans_1_4 571-725 aa
XP_057767788.1PF24861
SUS_N 8-120 aa
PF24862
SUS_EPBD 155-242 aa
PF00862
GT-B_Sucrose_synth 265-553 aa
PF00534
Glycos_transf_1 565-727 aa
PF13692
Glyco_trans_1_4 571-725 aa
XP_057767797.1PF24861
SUS_N 8-120 aa
PF24862
SUS_EPBD 155-242 aa
PF00862
GT-B_Sucrose_synth 265-553 aa
PF00534
Glycos_transf_1 565-727 aa
PF13692
Glyco_trans_1_4 571-725 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767771.1 |
Pfam | PF24861 |
SUS_N | Domain | 8 | 120 | 3.2e-44 | 150.5 | Sucrose synthase N-terminal |
XP_057767771.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 155 | 242 | 3.6e-34 | 117.8 | Sucrose synthase EPBD domain |
XP_057767771.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 265 | 553 | 1.2e-165 | 550.2 | Sucrose synthase first GT-B domain |
XP_057767771.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 565 | 727 | 1.1e-30 | 107.1 | Glycosyl transferases group 1 |
XP_057767771.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 571 | 725 | 1.8e-14 | 54.9 | Glycosyl transferases group 1 |
XP_057767779.1 |
Pfam | PF24861 |
SUS_N | Domain | 8 | 120 | 3.2e-44 | 150.5 | Sucrose synthase N-terminal |
XP_057767779.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 155 | 242 | 3.6e-34 | 117.8 | Sucrose synthase EPBD domain |
XP_057767779.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 265 | 553 | 1.2e-165 | 550.2 | Sucrose synthase first GT-B domain |
XP_057767779.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 565 | 727 | 1.1e-30 | 107.1 | Glycosyl transferases group 1 |
XP_057767779.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 571 | 725 | 1.8e-14 | 54.9 | Glycosyl transferases group 1 |
XP_057767788.1 |
Pfam | PF24861 |
SUS_N | Domain | 8 | 120 | 3.2e-44 | 150.5 | Sucrose synthase N-terminal |
XP_057767788.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 155 | 242 | 3.6e-34 | 117.8 | Sucrose synthase EPBD domain |
XP_057767788.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 265 | 553 | 1.2e-165 | 550.2 | Sucrose synthase first GT-B domain |
XP_057767788.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 565 | 727 | 1.1e-30 | 107.1 | Glycosyl transferases group 1 |
XP_057767788.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 571 | 725 | 1.8e-14 | 54.9 | Glycosyl transferases group 1 |
XP_057767797.1 |
Pfam | PF24861 |
SUS_N | Domain | 8 | 120 | 3.2e-44 | 150.5 | Sucrose synthase N-terminal |
XP_057767797.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 155 | 242 | 3.6e-34 | 117.8 | Sucrose synthase EPBD domain |
XP_057767797.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 265 | 553 | 1.2e-165 | 550.2 | Sucrose synthase first GT-B domain |
XP_057767797.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 565 | 727 | 1.1e-30 | 107.1 | Glycosyl transferases group 1 |
XP_057767797.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 571 | 725 | 1.8e-14 | 54.9 | Glycosyl transferases group 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。