当前解析结果
SmilChr01G002939| 统一新 Gene ID | SmilChr01G002939 |
|---|---|
| 名称 | SmilChr01G002939 |
| 描述 | uncharacterized SmilChr01G002939 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 48165428 - 48173000 / - |
| NCBI Gene ID | LOC130988333 |
|---|---|
| GeneID | 130988333 |
| locus_tag | - |
| NCBI Name | LOC130988333 |
| 原始查询 | SmilChr01G002939 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SSIVA; symbol=SSIVA; hit=Os01g0720600; species=rice; confidence=high |
| 产物 | SSIVA; symbol=SSIVA; hit=Os01g0720600; species=rice; confidence=high |
| Arabidopsis | AT4G18240 (SS4)starch synthase 4 [Source:NCBI gene (formerly Entrezgene);Acc:827550] identity=44.5; qcov=0.811; evalue=1.47e-140; confidence=medium |
| Rice | Os01g0720600 (SSIVA)- identity=47; qcov=0.819; evalue=1.58e-146; confidence=high |
| GO | GO:0004373 (alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF08323 (Glyco_transf_5); PF13439 (Glyco_transf_4); PF13692 (Glyco_trans_1_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768134.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057768134.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768134.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768134.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768134.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:48165605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:48165916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B129 |
Chr1:48166108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,B37,C13 |
Chr1:48166162 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B26 |
Chr1:48166162 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B26 |
Chr1:48166166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr1:48166316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C8 |
Chr1:48167301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B24,B46,D4 |
Chr1:48171237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B84 |
Chr1:48171620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:48171764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:48171803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768134.1PF08323
Glyco_transf_5 121-349 aa
PF13439
Glyco_transf_4 135-296 aa
PF00534
Glycos_transf_1 420-576 aa
PF13692
Glyco_trans_1_4 422-543 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768134.1 |
Pfam | PF08323 |
Glyco_transf_5 | Domain | 121 | 349 | 1.4e-54 | 186.0 | Starch synthase catalytic domain |
XP_057768134.1 |
Pfam | PF13439 |
Glyco_transf_4 | Domain | 135 | 296 | 1.5e-10 | 42.1 | Glycosyltransferase Family 4 |
XP_057768134.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 420 | 576 | 2.9e-10 | 40.6 | Glycosyl transferases group 1 |
XP_057768134.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 422 | 543 | 3.8e-08 | 34.4 | Glycosyl transferases group 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。