Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002947`

染色体: Chr01 坐标: 48339572-48344425 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002947`
名称	SmilChr01G002947
描述	TORTIFOLIA1-like protein 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48339572 - 48344425 / `-`

ID 对照

NCBI Gene ID	`LOC130988398`
GeneID	`130988398`
locus_tag	`-`
NCBI Name	`LOC130988398`
原始查询	`SmilChr01G002947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TORTIFOLIA1-like protein 2
产物	TORTIFOLIA1-like protein 2
Arabidopsis	`AT2G07170` (AT2G07170) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815286] identity=43.1; qcov=1.04; evalue=0; confidence=medium
Rice	`Os09g0560000` - identity=39.9; qcov=1.03; evalue=5.11e-179; confidence=medium
GO	GO:0005874 (microtubule); GO:0008017 (microtubule binding)
KEGG	-
Pfam	PF12765 (Cohesin_HEAT); PF24713 (TOR1L1_C); PF24714 (TOR1L1_N)
InterPro	-
eggNOG	-
NR	GeneID:130988398

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057768209.1`
2	Phragmoplast	Phragmoplast	1.00000	`XP_057768209.1`
3	Cytosol	细胞质基质	0.60000	`XP_057768209.1`
4	Nucleus membrane	核膜	0.40000	`XP_057768209.1`
5	Nucleus	细胞核	0.00000	`XP_057768209.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48339771`	`C`	`CT`	1bp_insertion	frameshift_variant	144	A1,A10,A11,A14,A15,A18,A19,A21,A22,A23,A24,A25,A4,A6,A7,B102,B103,B105,B108,B111,B112,B114,B12,B120,B121,B124,B126,B127,B128,B129,B13,B130,B132,B134,B135,B136,B137,B139,B15,B16,B18,B2,B20,B21,B22,B24,B25,B28,B3,B31,B32,B35,B36,B38,B4,B40,B41,B44,B45,B46,B47,B48,B5,B51,B53,B54,B55,B56,B59,B62,B64,B65,B66,B69,B7,B70,B71,B72,B73,B74,B78,B8,B80,B81,B82,B83,B84,B89,B91,B94,B96,B99,C1,C11,C13,C14,C16,C17,C19,C2,C23,C24,C26,C28,C29,C32,C33,C34,C4,C41,C42,C46,C47,C48,C49,C54,C58,C59,C62,C64,C66,C67,C68,C69,C70,C74,C75,C76,C77,C78,C79,C81,C82,C86,C87,D1,D10,D11,D3,D4,D5,D6,D7,D8
`Chr1:48339787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B71,B76,C62,D7
`Chr1:48339817`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B126,C70
`Chr1:48339817`	`CT`	`C`	1bp_deletion	CDS_variant	2	B126,C70
`Chr1:48339829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr1:48339885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:48339918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B12,B26,C85
`Chr1:48340067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,D10
`Chr1:48340094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr1:48340124`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B7,B99
`Chr1:48340124`	`G`	`GT`	1bp_insertion	CDS_variant	2	B7,B99
`Chr1:48340148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768209.1

820 aa

410

820

TOR1L1_N

Cohesin_HEAT

TOR1L1_C

PF24714 TOR1L1_N 23-300 aa PF12765 Cohesin_HEAT 105-128 aa PF24713 TOR1L1_C 691-819 aa

XP_057768214.1

820 aa

410

820

TOR1L1_N

Cohesin_HEAT

TOR1L1_C

PF24714 TOR1L1_N 23-300 aa PF12765 Cohesin_HEAT 105-128 aa PF24713 TOR1L1_C 691-819 aa

XP_057768220.1

820 aa

410

820

TOR1L1_N

Cohesin_HEAT

TOR1L1_C

PF24714 TOR1L1_N 23-300 aa PF12765 Cohesin_HEAT 105-128 aa PF24713 TOR1L1_C 691-819 aa

XP_057768227.1

820 aa

410

820

TOR1L1_N

Cohesin_HEAT

TOR1L1_C

PF24714 TOR1L1_N 23-300 aa PF12765 Cohesin_HEAT 105-128 aa PF24713 TOR1L1_C 691-819 aa

XP_057768237.1

810 aa

405

810

TOR1L1_N

Cohesin_HEAT

TOR1L1_C

PF24714 TOR1L1_N 23-300 aa PF12765 Cohesin_HEAT 105-128 aa PF24713 TOR1L1_C 691-809 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768209.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	23	300	3.7e-115	384.8	TORTIFOLIA1 N-terminal
`XP_057768209.1`	Pfam	`PF12765`	Cohesin_HEAT	Repeat	105	128	0.00014	22.9	HEAT repeat associated with sister chromatid cohesion
`XP_057768209.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	691	819	4.5e-27	95.5	TORTIFOLIA1 C-terminal
`XP_057768214.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	23	300	3.7e-115	384.8	TORTIFOLIA1 N-terminal
`XP_057768214.1`	Pfam	`PF12765`	Cohesin_HEAT	Repeat	105	128	0.00014	22.9	HEAT repeat associated with sister chromatid cohesion
`XP_057768214.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	691	819	4.5e-27	95.5	TORTIFOLIA1 C-terminal
`XP_057768220.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	23	300	3.7e-115	384.8	TORTIFOLIA1 N-terminal
`XP_057768220.1`	Pfam	`PF12765`	Cohesin_HEAT	Repeat	105	128	0.00014	22.9	HEAT repeat associated with sister chromatid cohesion
`XP_057768220.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	691	819	4.5e-27	95.5	TORTIFOLIA1 C-terminal
`XP_057768227.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	23	300	3.7e-115	384.8	TORTIFOLIA1 N-terminal
`XP_057768227.1`	Pfam	`PF12765`	Cohesin_HEAT	Repeat	105	128	0.00014	22.9	HEAT repeat associated with sister chromatid cohesion
`XP_057768227.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	691	819	4.5e-27	95.5	TORTIFOLIA1 C-terminal
`XP_057768237.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	23	300	3.6e-115	384.8	TORTIFOLIA1 N-terminal
`XP_057768237.1`	Pfam	`PF12765`	Cohesin_HEAT	Repeat	105	128	0.00014	22.9	HEAT repeat associated with sister chromatid cohesion
`XP_057768237.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	691	809	5.8e-17	62.8	TORTIFOLIA1 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057912237.1
ACGAGAGCTAAAGAGAAGCATGACCCCACGTTGAATCCTCTCTTCAATTTCGAAAACCGAAACCCAAGCGCCAAAACTCAAAACTTCCAAACAAGCCAAGCCCAGCTTCCCCTCTCTCTCTCTCTCTCACACACACACACACGCACTGGCCCTCTTCTCGTGCGTACGGACGGGTTTTATGCTGCAACTACATTTTGATGTTTTATGGAAATCCTTTTTAAATTTGAAGGGAAAATCGTGGAAAGTCGGTTCCTAAGAGT...

XM_057912244.1
AAACCGAAACCCAAGCGCCAAAACTCAAAACTTCCAAACAAGCCAAGCCCAGCTTCCCCTCTCTCTCTCTCTCTCACACACACACACACGCACTGGCCCTCTTCTCGTGCGTACGGACGGGGAAAATCGTGGAAAGTCGGTTCCTAAGAGTTGATGGTGGAGTAAATCTTAACTGATGATCAGTTTAGCGTAAATTCAGTGAAAATGAAGACACATGCTAATATGGTGAAATCGAAAGCAACTTCAAGGGTGAGTAATCA...

CDS

5 records

下载 CDS FASTA

LOC130988398
ATGAAGACACATGCTAATATGGTGAAATCGAAAGCAACTTCAAGGGTGAGTAATCAGCAAGCTGTTTTTCAGCTGAAACAGCGTGTGGCTCTTTCAGTCAACAAGCTCGCGGATAGGGACACTTACCAACTCGGGGTGGAGGAGCTTGAGAAAACCATTGAATGCTTGACTCCCGATGGGGTTGCTCCTTTTCTATCTTGCATAATAGACACAGATTTTGAGAAGAAAAGTGCTGTCCGCAAAGAATGTATTCGCTTGAT...

Protein

5 records

下载 Protein FASTA

XP_057768209.1
MKTHANMVKSKATSRVSNQQAVFQLKQRVALSVNKLADRDTYQLGVEELEKTIECLTPDGVAPFLSCIIDTDFEKKSAVRKECIRLMGTLATFHEGLIGSHLGKIVASIVKRLKDSDTVVRDACVETVSVLASKLSSGRMESDIVFVTLVRPLFEALGEQNKQMQTGCALCLSQVIDNIHDPPPLVLQKMLTKTIKFLKNPHFMAKPAVIELNRSIILAGGAPSHSSLTAALTSIQELLKNSDWTTRKAACAALGDIASC...

XP_057768214.1
MKTHANMVKSKATSRVSNQQAVFQLKQRVALSVNKLADRDTYQLGVEELEKTIECLTPDGVAPFLSCIIDTDFEKKSAVRKECIRLMGTLATFHEGLIGSHLGKIVASIVKRLKDSDTVVRDACVETVSVLASKLSSGRMESDIVFVTLVRPLFEALGEQNKQMQTGCALCLSQVIDNIHDPPPLVLQKMLTKTIKFLKNPHFMAKPAVIELNRSIILAGGAPSHSSLTAALTSIQELLKNSDWTTRKAACAALGDIASC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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