Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002951`

染色体: Chr01 坐标: 48389141-48394808 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002951`
名称	SmilChr01G002951
描述	cycloartenol Synthase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48389141 - 48394808 / `-`

ID 对照

NCBI Gene ID	`LOC130988455`
GeneID	`130988455`
locus_tag	`-`
NCBI Name	`LOC130988455`
原始查询	`SmilChr01G002951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cycloartenol Synthase-like
产物	cycloartenol Synthase-like
Arabidopsis	`AT2G07050` (CAS1) cycloartenol synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:815275] identity=75.2; qcov=0.999; evalue=0; confidence=high
Rice	`Os02g0139700` (OsOSC2) - identity=70.3; qcov=0.996; evalue=0; confidence=high
GO	GO:0005811 (lipid droplet); GO:0016104 (triterpenoid biosynthetic process); GO:0016866 (intramolecular transferase activity)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00432 (Prenyltrans); PF13243 (SQHop_cyclase_C); PF13249 (SQHop_cyclase_N)
InterPro	-
eggNOG	-
NR	GeneID:130988455

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057768297.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057768297.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057768297.1`
4	Nucleus	细胞核	0.00000	`XP_057768297.1`
5	Chromosome	染色体	0.00000	`XP_057768297.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48389360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:48389677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,C19,C41,C59
`Chr1:48390136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:48390209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,B57
`Chr1:48391291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:48391658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,C19,C41,C59
`Chr1:48392226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B104,B59,C2,D10
`Chr1:48392495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C14,C74,D11,D7
`Chr1:48392517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr1:48392592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B109,B129
`Chr1:48393430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B109,B129
`Chr1:48393481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768297.1

758 aa

379

758

SQHop_cyclase_N

Prenyltrans

SQHop_cyclase_C

Prenyltrans

PF13249 SQHop_cyclase_N 106-358 aa PF00432 Prenyltrans 131-191 aa PF13243 SQHop_cyclase_C 413-749 aa PF00432 Prenyltrans 506-606 aa PF00432 Prenyltrans 620-720 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768297.1`	Pfam	`PF13249`	SQHop_cyclase_N	Repeat	106	358	2.7e-41	142.4	Squalene-hopene cyclase N-terminal domain
`XP_057768297.1`	Pfam	`PF00432`	Prenyltrans	Repeat	131	191	5.7e-09	36.5	Prenyltransferase alpha-alpha toroid domain
`XP_057768297.1`	Pfam	`PF13243`	SQHop_cyclase_C	Repeat	413	749	6.9e-59	200.2	Squalene-hopene cyclase C-terminal domain
`XP_057768297.1`	Pfam	`PF00432`	Prenyltrans	Repeat	506	606	5.7e-09	36.5	Prenyltransferase alpha-alpha toroid domain
`XP_057768297.1`	Pfam	`PF00432`	Prenyltrans	Repeat	620	720	5.7e-09	36.5	Prenyltransferase alpha-alpha toroid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912314.1
AAATCTGGATTAAAGTCAACTGAGTGAGAAGTCTCAGTCAACGGCGTCAACGCAGGAGACTTCATATCAACGAAGCCCAGAAACAGTTGCATGCATGCGATACTGTATGCTCTGTTTACTCCACTTGTAATTCTAACTGCCACTGCGACTGTTTAGGGGATGTGGAAGTTGAAGATCGCGGAGGGTTCGAGCCCTTGGCTGCGCACTGTAAATGGACACGTCGGCCGCCAAGTCTGGGAGTTCGATCCCAGTCTCGGCTC...

CDS

1 records

下载 CDS FASTA

LOC130988455
ATGTGGAAGTTGAAGATCGCGGAGGGTTCGAGCCCTTGGCTGCGCACTGTAAATGGACACGTCGGCCGCCAAGTCTGGGAGTTCGATCCCAGTCTCGGCTCTCCCGAAGAGCTGGCCGAGATCGAGAAGCTTCGCAAGGAGTTTCGCGATCATCGTTTCGAGAAGAAGCATTCTTCGGATCTTCTCATGAGACTTCAGTTTGCGAAGGATAATCGGAGCTCCGTGAATCTGCCCCAAGTAAAAGTGAATGATGTGGAAGA...

Protein

1 records

下载 Protein FASTA

XP_057768297.1
MWKLKIAEGSSPWLRTVNGHVGRQVWEFDPSLGSPEELAEIEKLRKEFRDHRFEKKHSSDLLMRLQFAKDNRSSVNLPQVKVNDVEDITEDKVANTLRRGIGFHSTLQADDGHWPGDYGGSLFLMPGLVIALSVTGALNAAFSEEHKREIRRYLYNHQNEDGGWGLHIEGLSTMFGSVLSYVTLRLLGEEADGGDGSMVKCREWILSHGGATAVTSWGKMWLSVLGAFEWSGNNPMPPEMWLLPYILPFHPGRMWNHCRM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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