Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002952`

染色体: Chr01 坐标: 48396784-48401513 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002952`
名称	SmilChr01G002952
描述	uncharacterized SmilChr01G002952
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48396784 - 48401513 / `+`

ID 对照

NCBI Gene ID	`LOC130988462`
GeneID	`130988462`
locus_tag	`-`
NCBI Name	`LOC130988462`
原始查询	`SmilChr01G002952`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833501]; symbol=AT5G35400; hit=AT5G35400; species=arabidopsis; confidence=high
产物	Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833501]; symbol=AT5G35400; hit=AT5G35400; species=arabidopsis; confidence=high
Arabidopsis	`AT5G35400` (AT5G35400) Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833501] identity=58.4; qcov=0.957; evalue=5.65e-135; confidence=high
Rice	`Os06g0663100` - identity=70.7; qcov=0.249; evalue=8.05e-41; confidence=weak
GO	GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity); GO:0031119 (tRNA pseudouridine synthesis)
KEGG	-
Pfam	PF01416 (PseudoU_synth_1)
InterPro	-
eggNOG	-
NR	GeneID:130988462

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057768308.1`
2	Mitochondrion matrix	线粒体基质	0.40000	`XP_057768308.1`
3	Nucleus	细胞核	0.40000	`XP_057768315.1`
4	Chromosome	染色体	0.00000	`XP_057768308.1`
5	Centromere	着丝粒	0.00000	`XP_057768308.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48396931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:48397264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B20,C62
`Chr1:48397313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B17,B59
`Chr1:48398415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:48398458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:48398777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr1:48399326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:48399664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:48399685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:48399693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B66,B68,C74,D7
`Chr1:48400377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:48401128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768308.1

428 aa

214

428

PseudoU_synth_1

PF01416 PseudoU_synth_1 351-417 aa

XP_057768315.1

369 aa

184

369

PseudoU_synth_1

PF01416 PseudoU_synth_1 292-358 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768308.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	351	417	2e-14	54.7	tRNA pseudouridine synthase
`XP_057768315.1`	Pfam	`PF01416`	PseudoU_synth_1	Domain	292	358	1.3e-14	55.2	tRNA pseudouridine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912325.1
AGTATTGTTTTAATTTAGCTCTTACTTAAAAAAAAGTTAAATACCTCAAAAAAAAAAGTTTAAAGAAAAATACTAAGGCGCCAATAACTGTAAGAGAGATATGATAAAGCAGCCGGGGACAACGGCGGTTATGCGGCTGAGAAACCTGATGGAGAGCCCCGCACCACCGCCTCCGAGGGATTACGTTCAGTACCAACATACTGACGCCCGCAGTCTCTACAGATGGACTGCAAGGGAAAGCTACGAGTTCATGTACGCAA...

XM_057912332.1
CTCTTACTTAAAAAAAAGTTAAATACCTCAAAAAAAAAAGTTTAAAGAAAAATACTAAGGCGCCAATAACTGTAAGAGAGATATGATAAAGCAGCCGGGGACAACGGCGGTTATGCGGCTGAGAAACCTGATGGAGAGCCCCGCACCACCGCCTCCGAGGGATTACGTTCAGTACCAACATACTGACGCCCGCAGTCTCTACAGATGGACTGCAAGGGAAAGCTACGAGTTCATGTACGCAAGACCGTGGCATAAGATTA...

CDS

2 records

下载 CDS FASTA

LOC130988462
ATGATAAAGCAGCCGGGGACAACGGCGGTTATGCGGCTGAGAAACCTGATGGAGAGCCCCGCACCACCGCCTCCGAGGGATTACGTTCAGTACCAACATACTGACGCCCGCAGTCTCTACAGATGGACTGCAAGGGAAAGCTACGAGTTCATGTACGCAAGACCGTGGCATAAGATTAATGATTTTTATTTAGATGTGGTGAATGGCCGCCAATCGTTGCATCAATTGTTTCCGGAAGAGACGAATGATGTAGATGCTGT...

LOC130988462
ATGGCCGCCAATCGTTGCATCAATTGTTTCCGGAAGAGGTGGGAATTTGTTAAAGTTGCAAAGACGAATGATGTAGATGCTGTCGATGGTTTTGACAAACCTGAATCAGAAAGTGTTCCGGCTAAGGGTAGAACCGGGAGATGGGCGAGGGCCACATTCAAAATACTTATCTCCTACAATGGAAATTCTTTTGATGGGTGGCAGAAACAGCCTGGTCTAAACACAGTTCAAGGATTGGTTGAAAGTTCTCTTGGGAAATT...

Protein

2 records

下载 Protein FASTA

XP_057768308.1
MIKQPGTTAVMRLRNLMESPAPPPPRDYVQYQHTDARSLYRWTARESYEFMYARPWHKINDFYLDVVNGRQSLHQLFPEETNDVDAVDGFDKPESESVPAKGRTGRWARATFKILISYNGNSFDGWQKQPGLNTVQGLVESSLGKFVDEKKAQLLKEKKLPLEGCALVAGRTDKGVTALGQVCAFYTWRKDVKALDIEDALKSAAPGKIRVTSVSQVSRDFHPNFSAKWRHYFYIFPINEENVDDEISGCKNDNLNKAIC...

XP_057768315.1
MAANRCINCFRKRWEFVKVAKTNDVDAVDGFDKPESESVPAKGRTGRWARATFKILISYNGNSFDGWQKQPGLNTVQGLVESSLGKFVDEKKAQLLKEKKLPLEGCALVAGRTDKGVTALGQVCAFYTWRKDVKALDIEDALKSAAPGKIRVTSVSQVSRDFHPNFSAKWRHYFYIFPINEENVDDEISGCKNDNLNKAICQDEDDEGLGEQNCEDEDDDYGQTQKSGSKPFTFEVSRVNCLLHQLEGKLLSFRMFARDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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