当前解析结果
SmilChr01G002953| 统一新 Gene ID | SmilChr01G002953 |
|---|---|
| 名称 | SmilChr01G002953 |
| 描述 | pollen receptor-like kinase 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 48402133 - 48404640 / + |
| NCBI Gene ID | LOC130988478 |
|---|---|
| GeneID | 130988478 |
| locus_tag | - |
| NCBI Name | LOC130988478 |
| 原始查询 | SmilChr01G002953 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen receptor-like kinase 1 |
| 产物 | pollen receptor-like kinase 1 |
| Arabidopsis | AT5G35390 (PRK1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833500] identity=43.6; qcov=0.876; evalue=4.21e-173; confidence=medium |
| Rice | Os06g0663000 (OsSTA176)- identity=40.9; qcov=0.81; evalue=4.41e-122; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988478 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768327.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768327.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768327.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768327.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:48402379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B138,B82 |
Chr1:48402401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B138 |
Chr1:48402439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,B138 |
Chr1:48402456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:48402458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:48402522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr1:48402571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B93 |
Chr1:48402639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B24,B93 |
Chr1:48402681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr1:48402697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B26 |
Chr1:48402703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr1:48402708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B18,B57,C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768327.1PF08263
LRRNT_2 101-143 aa
PF13855
LRR_8 194-255 aa
PF00560
LRR_1 221-242 aa
PF00560
LRR_1 267-288 aa
PF00069
Pkinase 423-692 aa
PF07714
PK_Tyr_Ser-Thr 423-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768327.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 101 | 143 | 1.5e-07 | 32.2 | Leucine rich repeat N-terminal domain |
XP_057768327.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 194 | 255 | 4.6e-12 | 46.2 | Leucine rich repeat |
XP_057768327.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 221 | 242 | 9.5e-13 | 46.3 | Leucine Rich Repeat |
XP_057768327.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 267 | 288 | 9.5e-13 | 46.3 | Leucine Rich Repeat |
XP_057768327.1 |
Pfam | PF00069 |
Pkinase | Domain | 423 | 692 | 9.1e-28 | 98.1 | Protein kinase domain |
XP_057768327.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 423 | 694 | 1.6e-28 | 100.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。