Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002973`

染色体: Chr01 坐标: 48673707-48675678 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002973`
名称	SmilChr01G002973
描述	probable glycerol-3-phosphate acyltransferase 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48673707 - 48675678 / `+`

ID 对照

NCBI Gene ID	`LOC130988684`
GeneID	`130988684`
locus_tag	`-`
NCBI Name	`LOC130988684`
原始查询	`SmilChr01G002973`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable glycerol-3-phosphate acyltransferase 2
产物	probable glycerol-3-phosphate acyltransferase 2
Arabidopsis	`AT4G01950` (GPAT3) glycerol-3-phosphate acyltransferase 3 [Source:NCBI gene (formerly Entrezgene);Acc:827165] identity=49.3; qcov=0.946; evalue=4.44e-155; confidence=high
Rice	`Os11g0679700` (OsGPAT3) - identity=47.8; qcov=0.956; evalue=3.4e-136; confidence=high
GO	GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase); PF23270 (HAD_RAM2_N)
InterPro	-
eggNOG	-
NR	GeneID:130988684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057768579.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057768579.1`
3	Nucleus	细胞核	0.00000	`XP_057768579.1`
4	Chromosome	染色体	0.00000	`XP_057768579.1`
5	Centromere	着丝粒	0.00000	`XP_057768579.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48673910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B89,C65,D8
`Chr1:48673912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,B85
`Chr1:48673992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:48674063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B18,C18,C42
`Chr1:48674224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:48674272`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	B37
`Chr1:48674272`	`CCT`	`C`	2bp_deletion	CDS_variant	1	B37
`Chr1:48674299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,D7
`Chr1:48674315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,B85
`Chr1:48674341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:48674383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:48674901`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B6,B66,C19,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768579.1

523 aa

262

523

HAD_RAM2_N

Acyltransferase

PF23270 HAD_RAM2_N 61-237 aa PF01553 Acyltransferase 332-433 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768579.1`	Pfam	`PF23270`	HAD_RAM2_N	Domain	61	237	7.1e-61	205.9	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
`XP_057768579.1`	Pfam	`PF01553`	Acyltransferase	Family	332	433	1e-08	35.7	Acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912596.1
AATGATGCATGTATCGCGATAGCAAAGGGCGAAACACGAGAAATAAGATGAAAGTATAACACATGAATGGCGGCGAAACTATATGGGAACGGGTTATGGAAAACCAAACAAGAATATTATAAATTGACAAGCACGTTCCATGCAAATGCTGCATTCATCATGCAAACATGGCTCTCAATATCATCCCCAGCTTCAACAAAATCGCCCTCTTCTTTTACATTTTTCTCAAATATCTGAAAAACCCTAACACCAAGAATCTC...

CDS

1 records

下载 CDS FASTA

LOC130988684
ATGGCTCTCAATATCATCCCCAGCTTCAACAAAATCGCCCTCTTCTTTTACATTTTTCTCAAATATCTGAAAAACCCTAACACCAAGAATCTCCACAGCGATGCGACGACCTCAACGACACAACCCGAGTTTCAAGAATTCCGGTTTCTCGGCCAGAAACCAGACCTCGAAAACCGGGTTGTGATCTTCGACGTCGAAAAAGCCCTACTCAAATCTTCCTCACTTTTCCCTTACTTCATGCTTGTAGCTTTTGAAGCTGG...

Protein

1 records

下载 Protein FASTA

XP_057768579.1
MALNIIPSFNKIALFFYIFLKYLKNPNTKNLHSDATTSTTQPEFQEFRFLGQKPDLENRVVIFDVEKALLKSSSLFPYFMLVAFEAGSPIRSLILLLLYPLIRVLAEGFAFKAMVMICFLGLKSERFKEGKSVLPKFFLEDVGMESFLAIRRAKTTVAVSSLPQIMVESFLIDYLDVDFVVGRDLKLFHGYFLGFMEQRREPSLDGVITSSAIGFCSSKLQPFPNRLFSSCKEIYLVSDEERRNWHQLARDSYPKPLILH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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