当前解析结果
SmilChr01G002980| 统一新 Gene ID | SmilChr01G002980 |
|---|---|
| 名称 | SmilChr01G002980 |
| 描述 | probable inactive receptor kinase At2g26730 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 48734833 - 48739283 / - |
| NCBI Gene ID | LOC130988762 |
|---|---|
| GeneID | 130988762 |
| locus_tag | - |
| NCBI Name | LOC130988762 |
| 原始查询 | SmilChr01G002980 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase At2g26730 |
| 产物 | probable inactive receptor kinase At2g26730 |
| Arabidopsis | AT2G26730 (AT2G26730)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817214] identity=68.2; qcov=0.989; evalue=0; confidence=high |
| Rice | Os01g0607900 (OsRPK1)- identity=57.8; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988762 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768705.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768705.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768705.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768705.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768705.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:48735155 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | B84 |
Chr1:48735155 |
GGT |
G |
2bp_deletion | CDS_variant | 1 | B84 |
Chr1:48735196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:48735277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C48 |
Chr1:48735397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:48735442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C19,C41 |
Chr1:48735495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:48735544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,A9,B70,C16 |
Chr1:48737815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:48737909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:48737937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr1:48738061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768705.1PF08263
LRRNT_2 30-65 aa
PF13855
LRR_8 70-130 aa
PF00560
LRR_1 95-117 aa
PF00560
LRR_1 119-141 aa
PF00560
LRR_1 143-165 aa
PF00069
Pkinase 358-619 aa
PF07714
PK_Tyr_Ser-Thr 358-620 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768705.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 65 | 6.4e-07 | 30.3 | Leucine rich repeat N-terminal domain |
XP_057768705.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 70 | 130 | 1.2e-13 | 51.3 | Leucine rich repeat |
XP_057768705.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 95 | 117 | 1.4e-14 | 51.8 | Leucine Rich Repeat |
XP_057768705.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 119 | 141 | 1.4e-14 | 51.8 | Leucine Rich Repeat |
XP_057768705.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 143 | 165 | 1.4e-14 | 51.8 | Leucine Rich Repeat |
XP_057768705.1 |
Pfam | PF00069 |
Pkinase | Domain | 358 | 619 | 9.3e-35 | 121.0 | Protein kinase domain |
XP_057768705.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 358 | 620 | 3.5e-36 | 125.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。