Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002998

染色体: Chr01 坐标: 48927161-48929410 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002998
名称SmilChr01G002998
描述uncharacterized SmilChr01G002998
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向48927161 - 48929410 / -

ID 对照

NCBI Gene IDLOC130988924
GeneID130988924
locus_tag-
NCBI NameLOC130988924
原始查询SmilChr01G002998

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822001]; symbol=AT3G24150; hit=AT3G24150; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822001]; symbol=AT3G24150; hit=AT3G24150; species=arabidopsis; confidence=medium
ArabidopsisAT3G24150 (AT3G24150)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822001]
identity=44.6; qcov=0.497; evalue=5.2e-34; confidence=medium
Rice-
-
GOGO:0003712 (transcription coregulator activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130988924

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057768895.1
2 Chromosome 染色体 0.00000 XP_057768895.1
3 Centromere 着丝粒 0.00000 XP_057768895.1
4 Chromatin 染色质 0.00000 XP_057768895.1
5 Telomere 端粒 0.00000 XP_057768895.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:48927877 C T EMS_canonical_SNV CDS_variant 1 C55
Chr1:48928039 C T EMS_canonical_SNV CDS_variant 1 B45
Chr1:48928304 C T EMS_canonical_SNV CDS_variant 1 B75
Chr1:48928346 C T EMS_canonical_SNV CDS_variant 4 B18,B40,B66,B67

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057912920.1
GGGGGGCAGAATGGCACATCACACCATCAATCAAACAGCCCCACTCCCCCATTGCTCAAGCATTTATTGCTTCTACCCAAAACCAAATGCTAAAAAGCGCAGCATCTCTCTCCTCTTTCTCCCTCTACTCCTCCCCTCCAACCCCATACTACTCCAATACTACTACACTACACCTCTGCCAAGATTGTTTCTTTCGATTCCTTCTTCAGCTGTTCCAGCAAATCTGCTTTTCTGTTCCAGGGTTTTTCTTCTCTTTTTCT...
XM_057912912.1
GGGGGCAGAATGGCACATCACACCATCAATCAAACAGCCCCACTCCCCCATTGCTCAAGCATTTATTGCTTCTACCCAAAACCAAATGCTAAAAAGCGCAGCATCTCTCTCCTCTTTCTCCCTCTACTCCTCCCCTCCAACCCCATACTACTCCAATACTACTACACTACACCTCTGCCAAGATTGTTTCTTTCGATTCCTTCTTCAGCTGTTCCAGCAAATCTGCTTTTCTGTTCCAGGGTTTTTCTTCTCTTTTTCTT...

CDS

3 records

下载 CDS FASTA
LOC130988924
ATGCCCAGGCCAGGACCCAGACCTTACGAGTGCGTGCGAAGAGCTTGGCATAGTGAAAGGCACCAGCCCATCAGAGGTTTGGTTATCCAACAGATTTTCAGGCTTGTACATGATAATCACTCCGCTGCAACTAAAAAGAACAAAGAATGGCAGGAGAAGCTGCCTATTGTGGTCTTGAAAGCGGAGGAAATCATGTACTCCAAAGCCAACTCTGAGGCTGAATACTCCAATATTGAGACGCTATGGGACCGTGTGAATGA...
LOC130988924
ATGTACTCCAAAGCCAACTCTGAGGCTGAATACTCCAATATTGAGACGCTATGGGACCGTGTGAATGATGCCGTCGACACAATTATTCGGAAAGACGACACCACGGAGACTGGGGAGCTTCTGCCTCCGTGTGTTGAAGCTGCACTTAACCTAGGGTGTGTACCGGTAAGGGCATCCAGAAGCCAAAGGCACAATAATCCGAGAACTTACCTCAGACCTTCCTATCAAGAATGCAATAATAGCATGTCTCCGAGGTTCCT...

Protein

3 records

下载 Protein FASTA
XP_057768895.1
MPRPGPRPYECVRRAWHSERHQPIRGLVIQQIFRLVHDNHSAATKKNKEWQEKLPIVVLKAEEIMYSKANSEAEYSNIETLWDRVNDAVDTIIRKDDTTETGELLPPCVEAALNLGCVPVRASRSQRHNNPRTYLRPSYQECNNSMSPRFLNDNVNERNPDLMPAQTTSSSMLKMPQHVDSARLVWESNKRIAPISTNQHIASSFEKLHCIGNKNGVELECNASLSRTSVYPLYYGMTFKPEVRQLGFQEAQKSDSVIIG...
XP_057768903.1
MYSKANSEAEYSNIETLWDRVNDAVDTIIRKDDTTETGELLPPCVEAALNLGCVPVRASRSQRHNNPRTYLRPSYQECNNSMSPRFLNDNVNERNPDLMPAQTTSSSMLKMPQHVDSARLVWESNKRIAPISTNQHIASSFEKLHCIGNKNGVELECNASLSRTSVYPLYYGMTFKPEVRQLGFQEAQKSDSVIIGVPVFSSPAEPAAEGGCLQNLFPYGEDKFLGKRTCEVASKDSKGKGPQAGFDLSLRLGLFSDSNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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