Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003003`

染色体: Chr01 坐标: 49021629-49024272 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003003`
名称	SmilChr01G003003
描述	uncharacterized SmilChr01G003003
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49021629 - 49024272 / `-`

ID 对照

NCBI Gene ID	`LOC130988974`
GeneID	`130988974`
locus_tag	`-`
NCBI Name	`LOC130988974`
原始查询	`SmilChr01G003003`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipase-like protein (PEARLI 4) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816192]; symbol=AT2G16900; hit=AT2G16900; species=arabidopsis; confidence=low
产物	phospholipase-like protein (PEARLI 4) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816192]; symbol=AT2G16900; hit=AT2G16900; species=arabidopsis; confidence=low
Arabidopsis	`AT2G16900` (AT2G16900) phospholipase-like protein (PEARLI 4) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816192] identity=29.2; qcov=0.37; evalue=8.86e-14; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF05278 (PEARLI-4)
InterPro	-
eggNOG	-
NR	GeneID:130988974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768947.1`
2	Chromosome	染色体	0.80000	`XP_057768947.1`
3	Centromere	着丝粒	0.00000	`XP_057768947.1`
4	Chromatin	染色质	0.00000	`XP_057768947.1`
5	Telomere	端粒	0.00000	`XP_057768947.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49021861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C53
`Chr1:49021919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C81
`Chr1:49021947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C28
`Chr1:49022010`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C43
`Chr1:49022024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B54,C55
`Chr1:49022041`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C24,C84
`Chr1:49022041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,C84
`Chr1:49022206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,B60,B79
`Chr1:49022313`	`A`	`AC`	1bp_insertion	frameshift_variant	172	A10,A11,A15,A18,A19,A2,A22,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B106,B108,B109,B11,B110,B111,B113,B117,B118,B12,B120,B121,B122,B124,B125,B127,B128,B13,B130,B132,B135,B136,B138,B139,B16,B17,B19,B2,B20,B21,B22,B23,B26,B27,B28,B29,B30,B31,B32,B33,B34,B37,B4,B41,B43,B46,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B62,B64,B65,B66,B70,B71,B72,B76,B77,B78,B79,B8,B80,B81,B82,B85,B86,B87,B9,B90,B91,B93,B94,B95,B96,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C2,C21,C22,C23,C24,C25,C27,C29,C3,C30,C34,C35,C36,C38,C39,C43,C45,C46,C47,C49,C50,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C63,C65,C67,C68,C69,C7,C72,C74,C78,C8,C80,C81,C82,C83,C87,C9,D1,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:49022316`	`GC`	`G`	1bp_deletion	frameshift_variant	158	A10,A11,A15,A18,A19,A2,A22,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B101,B102,B103,B106,B108,B109,B11,B110,B111,B113,B117,B118,B120,B121,B122,B124,B127,B128,B13,B130,B132,B135,B138,B139,B17,B19,B2,B20,B21,B22,B23,B26,B27,B28,B29,B30,B31,B32,B33,B34,B37,B4,B41,B43,B46,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B62,B65,B66,B70,B71,B72,B76,B77,B78,B79,B8,B80,B81,B82,B85,B86,B9,B90,B91,B93,B94,B96,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C2,C21,C23,C25,C27,C29,C30,C34,C35,C36,C38,C39,C43,C45,C46,C47,C49,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C63,C65,C67,C68,C69,C7,C72,C74,C78,C8,C80,C82,C83,C87,D1,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:49022356`	`A`	`ACC`	2bp_insertion	frameshift_variant	150	A10,A11,A15,A18,A19,A2,A22,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B102,B103,B108,B109,B11,B110,B111,B113,B118,B12,B120,B121,B122,B124,B125,B127,B128,B129,B130,B132,B135,B138,B139,B16,B17,B19,B2,B21,B22,B23,B26,B27,B28,B29,B30,B32,B33,B34,B37,B4,B41,B43,B46,B5,B50,B51,B52,B53,B55,B57,B59,B6,B61,B62,B64,B65,B70,B71,B72,B76,B78,B79,B8,B81,B82,B85,B86,B87,B9,B90,B91,B93,B94,B96,B98,B99,C1,C10,C11,C14,C15,C16,C17,C2,C21,C22,C23,C24,C25,C27,C28,C29,C30,C36,C38,C39,C43,C45,C46,C47,C49,C52,C53,C55,C56,C58,C6,C60,C63,C65,C67,C68,C69,C72,C74,C78,C8,C80,C81,C82,C83,C87,C9,D1,D11,D3,D4,D5,D6,D7,D8,D9
`Chr1:49022359`	`TGC`	`T`	2bp_deletion	frameshift_variant	150	A10,A11,A15,A18,A19,A2,A22,A23,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B102,B103,B108,B109,B11,B110,B111,B113,B118,B12,B120,B121,B122,B124,B125,B127,B128,B129,B130,B132,B135,B138,B139,B16,B17,B19,B2,B21,B22,B23,B26,B27,B28,B29,B30,B32,B33,B34,B37,B4,B41,B43,B46,B5,B50,B51,B52,B53,B55,B57,B59,B6,B61,B62,B64,B65,B70,B71,B72,B76,B78,B79,B8,B81,B82,B85,B86,B87,B9,B90,B91,B93,B94,B96,B98,B99,C1,C10,C11,C14,C15,C16,C17,C2,C21,C22,C23,C24,C25,C27,C28,C29,C30,C36,C38,C39,C43,C45,C46,C47,C49,C52,C53,C55,C56,C58,C6,C60,C63,C65,C67,C68,C69,C72,C74,C78,C8,C80,C81,C82,C83,C87,C9,D1,D11,D3,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768947.1

435 aa

218

435

PEARLI-4

PF05278 PEARLI-4 245-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768947.1`	Pfam	`PF05278`	PEARLI-4	Family	245	413	3.5e-20	73.4	Arabidopsis phospholipase-like protein (PEARLI 4)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912964.1
TCCTCTGATTTTGCCATCTGTATGTTGATTTCCTGTCAACCATCGATTCAAGTTACCGAATCCCATCACAAAATCTCCATCATTTCTTCTGTTCTCTCTCTCTCTCAGTTTTGTTTTGTTTTCAAACTTGGCCTCTGTATTTCAAAGCGGTAGACACAAATGGAAAAGAAGAAAAAAGGCCCCAAACCAAGTAGACTCCAAGAAGAAGAGGTAAACAACAACAGCTTCGATGGTAGTGGTGGTAATAGCAAGAGAAGAAA...

CDS

1 records

下载 CDS FASTA

LOC130988974
ATGGAAAAGAAGAAAAAAGGCCCCAAACCAAGTAGACTCCAAGAAGAAGAGGTAAACAACAACAGCTTCGATGGTAGTGGTGGTAATAGCAAGAGAAGAAACTCAAGCGACAAAATGGAGAATGAAAAAAGAGCAGCGACGAAAAGAGGGAGGCCCCACAAACAACAGAGGCGCCAAGAAGAAGATTTGAACAACACCACCTTTGATTGTGCTGCTGCTAATATAAATGCTTCTTTTTCTTCTCAAGGGCATGAGTCTGC...

Protein

1 records

下载 Protein FASTA

XP_057768947.1
MEKKKKGPKPSRLQEEEVNNNSFDGSGGNSKRRNSSDKMENEKRAATKRGRPHKQQRRQEEDLNNTTFDCAAANINASFSSQGHESASLDQPRPRTRFSMSFGKKKAAVSSQSRIPPHSIGGNSSENSSLLLVKQILFESNSMDKANHVALEAKDTHSELESISPDEVVEAQKGMDPRKNVLDLQKFTSELLAQTQQPELSFQAGEASSCSDDLMVNNSLLEREANVVPNISARANENPTTTPTRSKSPQKHDAMSDSGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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