Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003004`

染色体: Chr01 坐标: 49027842-49035830 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003004`
名称	SmilChr01G003004
描述	uncharacterized SmilChr01G003004
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49027842 - 49035830 / `-`

ID 对照

NCBI Gene ID	`LOC130988982`
GeneID	`130988982`
locus_tag	`-`
NCBI Name	`LOC130988982`
原始查询	`SmilChr01G003004`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RabGAP/TBC domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835335]; symbol=AT5G52580; hit=AT5G52580; species=arabidopsis; confidence=high
产物	RabGAP/TBC domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835335]; symbol=AT5G52580; hit=AT5G52580; species=arabidopsis; confidence=high
Arabidopsis	`AT5G52580` (AT5G52580) RabGAP/TBC domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835335] identity=67.1; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0709800` (OsGAP1) - identity=60.2; qcov=0.994; evalue=0; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0090630 (activation of GTPase activity)
KEGG	-
Pfam	PF00566 (RabGAP-TBC); PF12068 (PH_RBD); PF23436 (RabGap-TBC_2)
InterPro	-
eggNOG	-
NR	GeneID:130988982

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768957.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057768957.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057768957.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057768957.1`
5	Vesicle	囊泡	0.40000	`XP_057768957.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49029732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr1:49030563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:49030608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,C53
`Chr1:49030610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B30,C56,C60
`Chr1:49031102`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	B12
`Chr1:49031102`	`GCC`	`G`	2bp_deletion	CDS_variant	1	B12
`Chr1:49032239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr1:49032363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr1:49033564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B47,C28,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768957.1

647 aa

324

647

PH_RBD

RabGAP-TBC

RabGap-TBC_2

PF12068 PH_RBD 45-186 aa PF00566 RabGAP-TBC 351-579 aa PF23436 RabGap-TBC_2 440-594 aa

XP_057768962.1

647 aa

324

647

PH_RBD

RabGAP-TBC

RabGap-TBC_2

PF12068 PH_RBD 45-186 aa PF00566 RabGAP-TBC 351-579 aa PF23436 RabGap-TBC_2 440-594 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768957.1`	Pfam	`PF12068`	PH_RBD	Domain	45	186	2.8e-17	63.3	Rab-binding domain (RBD)
`XP_057768957.1`	Pfam	`PF00566`	RabGAP-TBC	Family	351	579	8.8e-47	160.3	Rab-GTPase-TBC domain
`XP_057768957.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	440	594	9.6e-15	55.6	RabGAP TBC domain
`XP_057768962.1`	Pfam	`PF12068`	PH_RBD	Domain	45	186	2.8e-17	63.3	Rab-binding domain (RBD)
`XP_057768962.1`	Pfam	`PF00566`	RabGAP-TBC	Family	351	579	4e-47	161.4	Rab-GTPase-TBC domain
`XP_057768962.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	440	594	1e-14	55.5	RabGAP TBC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912979.1
GAGGAGAAAAAGGAATGGTGGATAAAATGAGTAAATCAGCTTACAATTAAATGAAAACAAACACGGCCCGAACATCCTAACCGACCCAACTGCACTGCGGGCCCCAATTTAGAGTCTCCTCTCTTCCTCTCTCTCTCATTCTCTTTCTCTCTCCTCTCTCTTCCCTCTCTCGGCTTTCATCCTTTTGGCCGACATTTAATAAAAGAAATAAGAATCCCTCTTCCGTCTCCTTCGTCTTTAAGGAATCAGACACGATCCTC...

XM_057912974.1
CCGACCCAACTGCACTGCGGGCCCCAATTTAGAGTCTCCTCTCTTCCTCTCTCTCTCATTCTCTTTCTCTCTCCTCTCTCTTCCCTCTCTCGGCTTTCATCCTTTTGGCCGACATTTAATAAAAGAAATAAGAATCCCTCTTCCGTCTCCTTCGTCTTTAAGGAATCAGACACGATCCTCCCTCACCCCCCTCTCTCGCTCGCTTCCTCTGATTCGTAAATACAGTGTAACGATGCACGAACCTGACGCACATGATTTAT...

CDS

2 records

下载 CDS FASTA

LOC130988982
ATGCACGAACCTGACGCACATGATTTATCGGATGATGCCGATTATGCCGCATCGATTCAACAGGGCCCTCTAAGCATAAATCGGAATGACAGCATTGGACGAAGCTCACCCAGCGAGCCGGAAGGCGCAGAGGTTGTATATACTAAGGATAATGTGACAATACATCCTACTCAGTTCGCTTCCGAGAGAATTAGTGGTCGACTGAAGTTGATGAAGCAAGGAAATGCACTTTCCATGACATGGCTTCCTTACAAAGGGCA...

Protein

2 records

下载 Protein FASTA

XP_057768957.1
MHEPDAHDLSDDADYAASIQQGPLSINRNDSIGRSSPSEPEGAEVVYTKDNVTIHPTQFASERISGRLKLMKQGNALSMTWLPYKGQSSNARLTEKDKNLYTIRAVPFSEIRSIRRHTPTLGWQYIIVVMSTGLAFPPLYFYNGGVREFLATIKQHVVLVRSADDANVFLVNDFENPLQRTLSSLEIPRALTPVCESPTAPDQDKGELDKSSNIFQNGRRQKHHDPARDISIQVLEKFSLVTRFARETTSQLFRDSQFDS...

XP_057768962.1
MHEPDAHDLSDDADYAASIQQGPLSINRNDSIGRSSPSEPEGAEVVYTKDNVTIHPTQFASERISGRLKLMKQGNALSMTWLPYKGQSSNARLTEKDKNLYTIRAVPFSEIRSIRRHTPTLGWQYIIVVMSTGLAFPPLYFYNGGVREFLATIKQHVVLVRSADDANVFLVNDFENPLQRTLSSLEIPRALTPVCESPTAPDQDKGELDKSSNIFQNGRRQKHHDPARDISIQVLEKFSLVTRFARETTSQLFRDSQFDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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